BtaINT0052079 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025401 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr7:40365767-40367515:-
Coord C1 exon
chr7:40367393-40367515
Coord A exon
chr7:40366073-40367392
Coord C2 exon
chr7:40365767-40366072
Length
1320 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CCCATTTTTATCTCCTGCAGAAA
3' ss Score
10.65
Exon sequences
Seq C1 exon
CCCGTCATCAGTCTCCGCAGGTCCTCGGAGTGTCGGCCCTGGGGCCCGACCGCGGCCATGGAGCCTCTGGAGACCCCCGTCAAGGACGGCATCCTCTACCAGCAGCACGTCAAGTTCGGCAAG
Seq A exon
GTGGGGACCCTAGCTGCCCGGCGGCCGCCTAGGACAGGTGGTGGGCCTCTGCCCCAGACTCGGACAGGCCGCTAGGATTGGGAAAAAGAGGGTAGGCGTCAGGGTGGGGAATCCAACCTGGGTGTGGAGAAGTTCAGCCTCAGCGAGACCTGCCTCATTTACAGGTGGGAAGCCAAGAGCGGGGAGCCGGTAATGCCACCCTTGAGGCAGAGCAGAGGTGAGGGGCTGGCTAATCCAACAGCCTTCCATCCCATCTACTAGTGGCACTGTGGCCCCTGAGAGGGCTGGAGGCTGAGCTGGAGGAGCCCCTAAAAGGGGAGCTCCATCCTGCTGAAGAGGGCTCGGCTCTTCCCAGCCCTGTCCTGAGGTTGCGGGCCCTGCACACTCATAGCTCAGCCGCAGCTGCTGCCCAGGCAGATAAACCGTCTGTTTCCTTTGCTCGGAATTATTTGCATGTTTCCTTCCTTGCCATCATGAGACCCAGGCCTCCCTCCCACCCCACCCCTTGCCCCATGGCCTAAGTGACCTTTTCTTTGCAGGCGGTGGGGGCACCGACAAAGCAGGGCTGGCAGGTGGTCTGCTGTAGCCACTAGATATTACCCAGTAGAAGCCCCAGCCTCGTGCGTTCTCACAACCTTTTGATTTTTAAGTATTTTTTTTTTTATTATTTACTTGGCCATGCTGGGTCTCAGGGGCGGCGTGCAGGATGTTTTACTTGCCGCATGTGGGATCCAGTTCCCCGACCAGGGATCAAACCCAGGCCCCTGCATTGGGAGCATGGAGTCCTAGCCACTGGACCACCAGGGAAGTCCCCCCTCATGACCTTTGAGAGACGAAGATACTAGTGCTTATGGGGATCACAGTTGGGAAAGTGTGGGGGTAGATGTGAACCCAGGGCTGACTGACTCCAAGTACAGACTGTCCCCCTTGCCAGGCCAGCTCTGGCAAGGCATCCTGGGCTTCCCTGGTGGCTCAGACGGTAAAAAAGCTGCTCAGACAGTAAGGAATCTGCCTACAGTGCAGGAGACCGGGTTCAACCCCTAGGCCAGGAAGATCCCCTGGAGAAGGAAATGGTAACCCACTCCAGTATTCTTGCCTGGAAAATCCCATGGCCAGAAGAGCCTGTCTGGCTACAGTCCATGGGGTCACAAAGAGTCGGACACGACTGGACAACACTTCACTTTCACATGGCCTGAAGAGCGGGGAGGCGGAGGCCACCCTGGGTGGCCAGGAGCACTGGCTGAATGGCTTGTGTGGGGTTGAGATGCAGGTTGGGAACTGCCACTTGAGGGTCATCTCCCCCATTTTTATCTCCTGCAG
Seq C2 exon
AAATGCTGGCGGAAGGTATGGGGTCTACTCTATGCAGGAGGCCCCTCGGGCGTGGCCCGGCTAGAGAGCTGGGAGGTCCGGGATGGTGGCCTGGGGCCAGCAGGTGACAGGTCTGCGGGGCCTGGCCGGCGAGGAGAACGGCGGATCATTCGCCTGGCTGACTGTGTGTCTGTGCTACCGGCTGATGGTGAGAGCTGCCCCCGGGACACTGGTGCCTTCCTGCTCACCACCACGGAGCGAAGCCACCTGCTGGCCGCAGAGCACCGCCAGGCATGGATGGGCCCCATCTGTCAGCTGGCCTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025401:ENSBTAT00000035679:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGCATCCTCTACCAGCAG
R:
GGAAGGCCAGCTGACAGATG
Band lengths:
343-1663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]