GgaINT1011786 @ galGal4
Intron Retention
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9507381-9508719:-
Coord C1 exon
chr13:9508663-9508719
Coord A exon
chr13:9507672-9508662
Coord C2 exon
chr13:9507381-9507671
Length
991 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GTACCCTTCCTCCATTCCAGCGG
3' ss Score
9.21
Exon sequences
Seq C1 exon
ATGGAGAGACCAGTGAAGGATGGCATCATCTATGTACAGCACTGCAAATTTGGAAAG
Seq A exon
GTAAAGGGCAGAGGGTGGGTTTGTGGCTGGATGTAGGGTTTGCGCTGCTGGCATGCTGCTTGGGGCTGGGCCTGACCCCCCCCCCCCCCAGCATCTGGGAAGGGGCTGAGCAGAGCTGGGCCCTTTGGGCTCCAGCTTTAGTGGTAGTGCTCTCCCACTGCTGAGGGGACTCATCTGTGCAAGCACCAGCTTGTGCTCACCCCTGTGGGCTGTGTCCTTGCTTGGTCATTGCGTGATGTGCAATGAAACAATAAAGGTGTGTTACTGAGGCACAGCTCCGTGTGTGTGCAAGCCGGGCAGCAGGTGGGTTGCTGGGTTGAATGTGGTCCTGGGGCAGTGCCGTGGGAGAAGCGATGACTTCATGTGCTTGGATCTGTGGGCACATTATGGGTGACATCATGGCAGCCCCTGGAGCTGGGCGTTCACAAGTTGGCTCCTGCTGGCCTTCTCACAGCACAGAGTGCTCTGTGCTCACTGTGTGTGCGGGGCTACCTATGGTGTGCTAACAGAGTTGCTCCCATCTCGGTGCTGTGCAAGAGTCAAGCCTTAGAGCTGAAGCATTTAGCCCCCACGTGCATGGGGCTGTGCTCTGCCATGTGGGAGGCCCATGGGTATTTTGGGTGCTCTGTCACGTCTGTTTTCCAGGGCGGAGGCTCTGCTGTGCACTTGAGGTATGTGGGGGCTTGCAGCCCCTCCATCTCGTGATGAGCTGGGAAGGGACTGGTGCTGCAGAGCCTCCCCTGGGAGGAAATAGGCTGCAAGCTGCAGGGCCTGGCTGTGTGCGGCAGATGCGAGCTGCCAGCAGGAGCACAGCAGCTCAAAATGGCTTTCATTTGCATGGCGGTCTGGCATCAGAGCAGCTTTCTGTGCCCCGTCGCCGTGCGCAGCCTCGCAGGCAGAGACCCCTGCGTGCCCAATCCCAAGCCACGTGGCTATGGCAGACAGCTCCCTGCTGTCACTTGTTCATATCCGTACCCTTCCTCCATTCCAG
Seq C2 exon
CGGACCTGGAGGAAGATTCGAGCACAGCTCTTTGCTGCCAGCCCCTTCGGCGTGGCCCGCATGGAGAAGTTTGATGCACGGGATCACGGCACAGTGTCTGACATCTCCCTGCAGCGCTGCGCCCGCCGTGTCATCCGTCTGTCCGACTGCGTCTCCGTTGGCCCCATGGGCACTGAGAGCTGCCCCAAAGCCACTGCTGCCTTCTACCTCACCACCACCGAGAAGAACTACGTGCTGGCAGCCGAGCAGCGGGATGAGTGGATCGAGCAGCTCTGCCAGTTGGCCTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914:ENSGALT00000043441:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCAGTGAAGGATGGCA
R:
AGAGCTGCTCGATCCACTCAT
Band lengths:
327-1318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]