HsaINT1011768 @ hg38
Intron Retention
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177508237-177509657:-
Coord C1 exon
chr5:177509475-177509657
Coord A exon
chr5:177508543-177509474
Coord C2 exon
chr5:177508237-177508542
Length
932 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTCCCGCTCCCCTCCCGCAGAAG
3' ss Score
11.58
Exon sequences
Seq C1 exon
CTGTCTCTAGACGGAGGGACGGGAAGTGGCCAGAAGGGGAAGTGTGAGGAGTTCCCGTCCAGCCTGTCATCAGTCTCCCCAGGTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTCTACCAGCAGCATGTCAAGTTTGGCAAG
Seq A exon
GTGGGGACCCCTGGCTGCCAGGCAGCTGCCAAGGACCAACAGTGGGTGGAGAATGCAGCCTCTGCCCCTGCCTCGGACAGCCCAGGCAGACCTGGGAGACTTGGGAAGGGAGTCAGGGTGGAGGATCCCACCCAGGTATGGGGAGTGGAATGGAGTGCGGGTGTCAGCCTGAGACGGCAGGGGCTGAGCAGGCTCTGCCAGACCCTGCCTCCGGGAGAGATGGGAAATACAGGAGTGGGAGAGGGTCGAAGGCTCAAACCTCCCAGCAGGGAAGAGCTTCACAGCCTCTGACCCATGAAATAGTGCCACCGAGGGCCCTAAATAGGGTGAGGGGCTGAGCTGGAGGAGGCCTCAAGGGTGGAGCCCCTCCCTGCAGCGGCACTGTCCTGGGAGCAAGGAGGCAGGGGGTCACCTCTCCTCGGCAGCAGCCCCACACCCCCGCAGCTCAGCTGCAGCTGCTGCCCAGGCAGATAAACCGTCAGTTTCCTTTGCTCGAAGCTATTTGCATGTTTCCTTCCTTAACAGCTTGAGGCAGAGGCCTCCCTCCCACCCCAGCTCTTGGCCTGTGGCCCAAGTGCCCCTTTTTGGGGGTGAGAGGGAACCAATATAATGGCAGTGTCTGGTGGTCTGCCCGGCCACTGGATGCTTTACAAACATGACCCAGTAGCAGTCCCAGCTCGAGTTCTCATGGCCTTTTGAGAGACGACATTGATGCTTGTGGAGGTCACAGTTAGGAAAGAGCGGGCTGGGATTTGAACCCAGGGCTGACCAATCCCAAGCATAGCCAAGGCCTCCTTACCTGGCTCCCTGAGAAACTGGGGAGCAGAGGCCCGCTCCTGGCTGGGAGCGTTTGCCGAGCAGCTTGTGCTGAGCCAAGTGGCACGGACAATCTGCCACCCAAGGGTCTTCACCCTCCCGCTCCCCTCCCGCAG
Seq C2 exon
AAGTGCTGGCGGAAGGTGTGGGCTCTGCTGTATGCAGGAGGCCCATCAGGCGTGGCACGGCTGGAGAGCTGGGAGGTCCGGGATGGTGGCCTGGGAGCAGCGGGTGACAGGTCGGCAGGGCCTGGCCGGCGAGGGGAGCGACGGGTCATCCGCCTGGCTGACTGTGTGTCCGTGCTGCCGGCTGACGGCGAGAGCTGCCCCCGGGACACCGGTGCCTTCCTGCTCACCACCACCGAGCGAAGCCATCTACTGGCTGCTCAGCACCGCCAGGCCTGGATGGGCCCCATCTGCCAGCTGGCCTTCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094:ENST00000357198:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.117 A=NA C2=0.159
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCATCAGTCTCCCCAGGT
R:
GTGGTGAGCAGGAAGGCAC
Band lengths:
350-1282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains