HsaEX0020686 @ hg38
Exon Skipping
Gene
ENSG00000146094 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr5:177505011-177509575:-
Coord C1 exon
chr5:177509475-177509575
Coord A exon
chr5:177508237-177508542
Coord C2 exon
chr5:177505011-177505110
Length
306 bp
Sequences
Splice sites
3' ss Seq
CTCCCGCTCCCCTCCCGCAGAAG
3' ss Score
11.58
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GTCTTGAAGCGGCGGCCCTGCTCCTGGCCGTGACCATGGACCCTCTGGAGACCCCTATCAAGGATGGCATCCTCTACCAGCAGCATGTCAAGTTTGGCAAG
Seq A exon
AAGTGCTGGCGGAAGGTGTGGGCTCTGCTGTATGCAGGAGGCCCATCAGGCGTGGCACGGCTGGAGAGCTGGGAGGTCCGGGATGGTGGCCTGGGAGCAGCGGGTGACAGGTCGGCAGGGCCTGGCCGGCGAGGGGAGCGACGGGTCATCCGCCTGGCTGACTGTGTGTCCGTGCTGCCGGCTGACGGCGAGAGCTGCCCCCGGGACACCGGTGCCTTCCTGCTCACCACCACCGAGCGAAGCCATCTACTGGCTGCTCAGCACCGCCAGGCCTGGATGGGCCCCATCTGCCAGCTGGCCTTCCCG
Seq C2 exon
GGGACAGGGGAGGCCTCCTCAGGATCCACAGATGCCCAGTCTCCCAAGAGGGGCCTGGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000146094-'7-18,'7-15,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.159 C2=0.511
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217412=IRS=PU(1.6=2.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCTCCTGGCCGTGAC
R:
CCTGCCAGGAGGAGTAGATGG
Band lengths:
182-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development