BtaEX6039956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000025401 | DOK3
Description
docking protein 3 [Source:HGNC Symbol;Acc:HGNC:24583]
Coordinates
chr7:40363505-40367515:-
Coord C1 exon
chr7:40367393-40367515
Coord A exon
chr7:40365767-40366072
Coord C2 exon
chr7:40363505-40363604
Length
306 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTTATCTCCTGCAGAAA
3' ss Score
10.65
5' ss Seq
CCGGTGAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
CCCGTCATCAGTCTCCGCAGGTCCTCGGAGTGTCGGCCCTGGGGCCCGACCGCGGCCATGGAGCCTCTGGAGACCCCCGTCAAGGACGGCATCCTCTACCAGCAGCACGTCAAGTTCGGCAAG
Seq A exon
AAATGCTGGCGGAAGGTATGGGGTCTACTCTATGCAGGAGGCCCCTCGGGCGTGGCCCGGCTAGAGAGCTGGGAGGTCCGGGATGGTGGCCTGGGGCCAGCAGGTGACAGGTCTGCGGGGCCTGGCCGGCGAGGAGAACGGCGGATCATTCGCCTGGCTGACTGTGTGTCTGTGCTACCGGCTGATGGTGAGAGCTGCCCCCGGGACACTGGTGCCTTCCTGCTCACCACCACGGAGCGAAGCCACCTGCTGGCCGCAGAGCACCGCCAGGCATGGATGGGCCCCATCTGTCAGCTGGCCTTCCCG
Seq C2 exon
GGCACAGGGGAGAGTTCCTCAGGATCTGGGGAGGCAGAGGCTCGGCAGAGGAGCCTGGTCCCCATGGAGGAGAACTCCATCTACTCTTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025401-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.186 C2=0.382
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217412=IRS=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGTCATCAGTCTCCGCAG
R:
CCTGCCAGGAAGAGTAGATGGA
Band lengths:
220-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]