GgaEX7008457 @ galGal4
Exon Skipping
Gene
ENSGALG00000026914 | DOK3
Description
docking protein 3 [Source:RefSeq peptide;Acc:NP_001076832]
Coordinates
chr13:9507212-9508719:-
Coord C1 exon
chr13:9508663-9508719
Coord A exon
chr13:9507381-9507671
Coord C2 exon
chr13:9507212-9507299
Length
291 bp
Sequences
Splice sites
3' ss Seq
GTACCCTTCCTCCATTCCAGCGG
3' ss Score
9.21
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
ATGGAGAGACCAGTGAAGGATGGCATCATCTATGTACAGCACTGCAAATTTGGAAAG
Seq A exon
CGGACCTGGAGGAAGATTCGAGCACAGCTCTTTGCTGCCAGCCCCTTCGGCGTGGCCCGCATGGAGAAGTTTGATGCACGGGATCACGGCACAGTGTCTGACATCTCCCTGCAGCGCTGCGCCCGCCGTGTCATCCGTCTGTCCGACTGCGTCTCCGTTGGCCCCATGGGCACTGAGAGCTGCCCCAAAGCCACTGCTGCCTTCTACCTCACCACCACCGAGAAGAACTACGTGCTGGCAGCCGAGCAGCGGGATGAGTGGATCGAGCAGCTCTGCCAGTTGGCCTTTCAG
Seq C2 exon
GGCAAAAAGGAAGCAGCGCAAAGTAGCAGCACCGGTCTGCAGCCCATCCCTATGGAGGAGAACTGCCTCTACTCCTCGTGGCAGGATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026914-'1-2,'1-0,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217412=IRS=PU(1.0=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACCAGTGAAGGATGGCA
R:
ATCCTGCCACGAGGAGTAGAG
Band lengths:
140-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]