RnoEX0029429 @ rn6
Exon Skipping
Gene
ENSRNOG00000013564 | Dok3
Description
docking protein 3 [Source:RGD Symbol;Acc:1311840]
Coordinates
chr17:9639330-9642873:+
Coord C1 exon
chr17:9639330-9639419
Coord A exon
chr17:9640192-9640497
Coord C2 exon
chr17:9642774-9642873
Length
306 bp
Sequences
Splice sites
3' ss Seq
AAGGATCTCCTTTCTTACAGAAA
3' ss Score
7.58
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CGGGACTTCAGAACTGTTGTGGCCATGGAATCTGTGGAGACACCTGTCAAGGACGGCCTCCTCTACCAGCAGCACATGAAGTTTGGCAAG
Seq A exon
AAATGCTGGCGCAAAGTGTGGGCTCTGCTGTATGCAGGAGGCCCGTCGGGAGTAGCTCGGCTAGAAAGCTGGGACGTTCGTGATGGTGGCCTGGGGCCAGGAGGTGACAGGCCCGCAGGGCCTGGCCGTAGAGGGGAACGCCGGATCATACGCTTGGCTGACTGTGTATCTGTTCTGCCGGCGGATGGTGAGAGTTGCCCCAGGGACACTGGGGCCTTCCTGATCACCACCACTGAGCGAAGCCACCTGCTGGCTGCACAGCACCGCCAGTCATGGATGGACCCCATCTGCCAGCTGGCCTTCCCG
Seq C2 exon
AGTACCGGAGAATGTTCCTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTCCCCATGGAGGAAAACTCCATCTACTCCTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013564-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.245 C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0217412=IRS=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGAACTGTTGTGGCCA
R:
CCTGCCAGGAGGAGTAGATGG
Band lengths:
183-489
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]