MmuEX6058630 @ mm10
Exon Skipping
Gene
ENSMUSG00000035711 | Dok3
Description
docking protein 3 [Source:MGI Symbol;Acc:MGI:1351490]
Coordinates
chr13:55524481-55528538:-
Coord C1 exon
chr13:55528449-55528538
Coord A exon
chr13:55527332-55527637
Coord C2 exon
chr13:55524481-55524580
Length
306 bp
Sequences
Splice sites
3' ss Seq
AAGGGTCTCCTTTCTTACAGAAA
3' ss Score
8.04
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
CGGAACTTCAGAACTGCGGTGGCCATGGAGTCTGTGGAGCCCCCGGTCAAAGACGGCATCCTCTACCAGCAGCACGTAAAGTTTGGCAAG
Seq A exon
AAATGCTGGCGCAAAGTGTGGGCTCTGCTGTATGCGGGAGGCCCATCAGGGGTAGCTCGGCTAGAAAGCTGGGACGTGCGTGATGGTGGCCTGGGACCAGCAGGCGACAGGTCCACAGGGCCCAGCCGTCGAGGGGAACGCCGGGTCATACGCTTGGCTGACTGTGTATCTGTCCTGCCTGCGGATGGCGAGAGCTGTCCCAGGGACACTGGTGCCTTCCTGATTACCACCACTGAGCGAAGCCACCTGTTGGCTGCACAGCACCGCCAGTCCTGGGTGGACCCCATCTGTCAGCTGGCCTTCCCG
Seq C2 exon
GGTACCGGAGAATGTTCGTCAGGATCAGGACAGGCTGAGAGTCCAAAAAGGGGCTTTGTTCCCATGGAGGAAAACTCTATCTACTCCTCCTGGCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035711_MULTIEX1-3/5=2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=0.186 C2=0.544
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(12.8=68.2)
A:
PF0016924=PH=PD(85.5=98.0)
C2:
PF0217412=IRS=PU(1.0=2.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTCAGAACTGCGGTGG
R:
CCTGCCAGGAGGAGTAGATAGA
Band lengths:
186-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types