BtaINT0052391 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015330 | DPP4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MU57]
Coordinates
chr2:34569659-34570062:+
Coord C1 exon
chr2:34569659-34569731
Coord A exon
chr2:34569732-34569988
Coord C2 exon
chr2:34569989-34570062
Length
257 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTCCTTTCTCTCCCTGCAGATA
3' ss Score
15.46
Exon sequences
Seq C1 exon
AATTCAACAGTCATGAGCAGAGCTGAAAATTTTAAACAAGTTGAGTACCTCCTTATTCATGGAACAGCAGATG
Seq A exon
GTGAGTTTCAGTTAATTAGACTTTTTAGTATCACAGACAGGTTTGCAATTTCACTACTGACAAAACAAAAGCATGAGGGGCAAGACTGTTACATTTACTTCAATAAAACAGTGTTGCTTTCCACAACTCACTTGTCTTGGGATAAATGGGATGCTGAGTCCTAGAACTTCAGACAGTCCCCTTTCTTCCTGTGCCTTTTCCTACCATAAAAGTGGAGCAGCTATTAGTTACTTTCTGTTTCCTTTCTCTCCCTGCAG
Seq C2 exon
ATAACGTGCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTGGATGCTGGAGTGGATTTCCAGTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015330:ENSBTAT00000056886:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.6=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATTCAACAGTCATGAGCAGAGCT
R:
TGGAAATCCACTCCAGCATCC
Band lengths:
140-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]