GgaINT0048355 @ galGal3
Intron Retention
Gene
ENSGALG00000011110 | DPP4
Description
NA
Coordinates
chr7:22752843-22753236:+
Coord C1 exon
chr7:22752843-22752915
Coord A exon
chr7:22752916-22753162
Coord C2 exon
chr7:22753163-22753236
Length
247 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTTTTCTTCCATTTTTCAGATA
3' ss Score
11.72
Exon sequences
Seq C1 exon
AGTTCAACGGTAATGGCCAGAGCTGAAAAATTCAAGGAAGTTGAGTATCTCCTTATCCATGGAACAGCAGATG
Seq A exon
GTGAGTTACAGTTAATTAGACATTTTAGTATTACAGACAGGTTTGCAATTCTACTACTGACAAAACAAAAGCATGAAGGGGCAAGGCTGTTACATTTACGTCAATAAAATAATACAGCTTTATGCTCCTAATTTGTGTCTCAGGCAGCAGTGCTGGGGAGTTTGTGTTCATTGTTTTGCTTTTTCCCCCATAGTCGTACAGAAACAATTTTTGTTTACCTTTTCCATTTTTTTCTTCCATTTTTCAG
Seq C2 exon
ATAATGTTCACTTTCAGCAAGCAGCTCAGATTTCCAAAGCTCTTGTTGATGCTGAAGTGGATTTTCAGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011110:ENSGALT00000018100:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.5=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACGGTAATGGCCAGAGC
R:
TGCCTGAAAATCCACTTCAGCA
Band lengths:
142-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]