HsaINT0051788 @ hg19
Intron Retention
Gene
ENSG00000197635 | DPP4
Description
dipeptidyl-peptidase 4 [Source:HGNC Symbol;Acc:3009]
Coordinates
chr2:162851471-162851882:-
Coord C1 exon
chr2:162851810-162851882
Coord A exon
chr2:162851545-162851809
Coord C2 exon
chr2:162851471-162851544
Length
265 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
TTTCCTTTCTCTCCCTGCAGATA
3' ss Score
15.46
Exon sequences
Seq C1 exon
AATTCAACAGTCATGAGCAGAGCTGAAAATTTTAAACAAGTTGAGTACCTCCTTATTCATGGAACAGCAGATG
Seq A exon
GTGAGTTTCAGTTAATTAGACTTTTTAGTATCACAGACAGGTTTGCAATTTCACTACTGACAAAACAAAAGCATGAGGGGCAAGACTGTTACATTTACTTCAATAAAACAGTGTTGCTTTCCACAAGTCACTTGTCTTGGGCTAAATGGGATGCTGAGTCCTAGAACTTCAAACAGTCCCTTTCTTCTTGTGCCTTTCCCACCCCTTGGTACCAGAAAACTGGAGTGGCTATTAGCTACTTTATGTTTCCTTTCTCTCCCTGCAG
Seq C2 exon
ATAACGTTCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTCGATGTTGGAGTGGATTTCCAGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197635-DPP4:NM_001935:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.6=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAGTCATGAGCAGAGCTGA
R:
TGCCTGGAAATCCACTCCAAC
Band lengths:
140-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)