RnoINT0050835 @ rn6
Intron Retention
Gene
ENSRNOG00000030763 | Dpp4
Description
dipeptidylpeptidase 4 [Source:RGD Symbol;Acc:2515]
Coordinates
chr3:48295217-48295631:-
Coord C1 exon
chr3:48295559-48295631
Coord A exon
chr3:48295291-48295558
Coord C2 exon
chr3:48295217-48295290
Length
268 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTTCTCTGTCTTCCCCACAGATA
3' ss Score
12.91
Exon sequences
Seq C1 exon
AACTCAACAGTCATGAGCAGAGCTGAAAATTTTAAGCAAGTTGAGTACCTCCTTATTCACGGTACAGCAGATG
Seq A exon
GTGAGTTTCAGTTAATTAGACTTTTTAGCATCACAGACAGGTTTGCAGTTTCACTACTGACAAAACAAAAGCATGAGGGGCAAGACTGTTACATTTACTTCAATAAAACAGTGTTGCTTTCCACAACTCACTTGTCTTGGGCTAAATGGGATGCCGAGTCTTAGAACTTCAGTCACTTTCTTCTTGTGCCTTCCCCCTTTGGTATCTGAAAACTCCAGAGGCTATTAGCTACTTGTTTACGGCTGCTTGTTCTCTGTCTTCCCCACAG
Seq C2 exon
ATAATGTTCACTTTCAGCAGTCAGCTCAGATCTCCAAAGCCCTGGTGGATGCTGGCGTGGATTTCCAAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030763:ENSRNOT00000040482:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0032616=Peptidase_S9=FE(11.5=100)
A:
NA
C2:
PF0032616=Peptidase_S9=FE(11.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCAACAGTCATGAGCAGAGC
R:
TGGAAATCCACGCCAGCATC
Band lengths:
140-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]