BtaINT0052821 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141755743-141766109:-
Coord C1 exon
chr1:141765954-141766109
Coord A exon
chr1:141755877-141765953
Coord C2 exon
chr1:141755743-141755876
Length
10077 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
TAAATATCCTACTTTTCCAGTTC
3' ss Score
7.52
Exon sequences
Seq C1 exon
AGCTGGGCGAGATTAAAAATGTCACCACCACGCAGCCTTCCCTAGAGCTGGATGGGCTGGAGAAATACACCAACTACAGCATCCAGGTGCTGGCCTTTACCCGGGCTGGAGACGGCGTCCGGAGCGAGCAGATCTTCACCCGGACCAAAGAGGATG
Seq A exon
GTGAGCACGGGGGCAGGGCGTGGGGGCTCAGGTCCTGTCTGAACCTCCAGGGGACACACAGGAGGCTCCTGCCACGTGGCAGCATTCCCAGGAAGGAGCCATTGTTGGAAAGGCTGGGTCAGAGAGTTAACTCACCCACCGATTCCTGACTTGGCTCCTTGAACAGTTTTGCTGCCTTCCTAAAATATTCCAGCACAATTCAGACCACACTTCCTGTGTCACCTTGTTTGATTTATCCATTGTTTCTCTCTTCCCCTATAATTTTTCATTCTTTTTTGGGGAGCTATGTGCAAAGTCGCTTCAGTTGTGTCTGACTCTGTGCAATCCCATGGGCTGTAGCCCACCAGGCTCTGCTGTCTGTGAGATTCTCCAGGCAAGAATACTGGAGAGGGTTGCCATGCCCTGCTCCAGGAGATCTTCTCTACCCAGGGATCAAACCCACGTCTCTTACATCTCCTGCACTGGCAGGCAGATTCTTTACCACTAGAGCCACCTGGGATGCCCATTAGAATAATTTCAGTGCCTCTTCAGCTATTAGTGTAAGCTCTGACCAATTCCATCTCTCCACTTAAAAATTATGTAATAATCTACATTGTCCTATGCTTTGCCAGCTTTGGAGTAACATTAAAATAAGCCCTCAATTGAGAATTTCATGTTAATTTTTTAAAATTTCTTACAAGGGTTTTTGGGGCTTCCTTCATGGCTCAGTTGGTAAAGAATCCACCTGCAATGCAGGAGACCCCGGATTGATTCCTGGGTTGGGAAGATCCACTGGAGAAGGGAAAGGCTACCCACTCCAGTATTCTGGCTGGAGAATTCCATGGACTGTATAGTCCATGGGGTCACAAAGAGTCAGACACAACTAAGTGACTTTCACTTCTACAAGGGTTTATGATAATTTAGTAAAATTTTAATTATAGCACATTTCTCAGATCACTAATCTTACCATTCCATGCAGTTTGGACTTGTTATATGGCTGTTTCCCAATCCTACAAAAACTGTATGGCAAATCATTTTTTTATATTAAGGGAAAGCCTGGGGTGCCTTATCCAAGATGTGCTGAAGAATAATTTGACTTCTGATACATACTATAGCTGAAGAAGGAAATAGCAACCCACTCCAGTATGCTTCCGTAGGAAATCCCATGCACAGAGGAGCCTGGCGGGTTACAGTCCATGGAGGTCACAAAGAGCCAGACATTACTGAGTGATGAAGCATGAGCAGACATATTATAGCAATAGTGAAAAAGCAGTTTCCACCTTAGTAAAGGAAGGGGCAACTGGTGTCAAATTGATACCTGTGTGGGACTTTCCAGATTGGAGTTCAGAATTACACCAGAGCCAGGGTTGAGATGCAACCACTACACCTAAATTTTGTGCTGTTTTGGCTCCACGATTTTTTTTTTTTTTAACATCTTTCAGGCCTAAGTTCCCTAGGAAGCTGGTCAGGGCAGGGGTGGGAGAGCTATTGTTCACTGCCCATGACTGCCTGTGTATGGGCGGAGTCCTTTAAAGATGTCCTTTACTGTGTGTGAGTGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTTCAGTCACTCAATCATGTCCAGCTTTCTGTGGCCCTATGGACTATAGCCCACCAGGGTCCTCTGCCCATGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATGTCCTCCCCCAGGGGATCTTCCCAACCCAAGGATTGAACCCGCGTCTCTTGTGTCTCCTGCATTGGCAGGTGGGTTCTTCACCACTAGCGACACCTGGGAAGCCCGAAGTCCTTTGCTACCTAGGATATAAGCATGCTGCTGCTTCACCCCATGGCTGTCCTGTGGGAACAAGGCTAGGGTCATGCACTTGGAGGCCTGGAGACTCTCTCCCCTTCAGCTTGTCTGTCTTCTAAGGACACTGCCCTGATGTTTACAGCACCTCTCTCTGCTCTCCCCTCAGGGAACCCAGCCCTCCCCCTGAAGCAGCCTATCCATCCACCCTTCCACCATCATCTTCACTAGCCCTTCTTGCATTCTAGTTGCTACACACAAATTAAACCGCATCACCCCCAGTCTTTCTAGTACACACAAGTAATTATTCCCAGTTATAGGCAGGTGCCAGTCATTTTGCCCAGTTATTGGATTCTTTAGGGAAATCTAAGGCATCACCGACTCGATGGACATGAGTTTGGGTAAACTCCGGGAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTCACAAAGAGTTGGACACGACTGAGCGACTGAACTGAACTGAAGGTCAAAATACCATGCATTAGGAAGCCCCAGGTTCAAAGAGATGTCTGCAAAGCTATGCCCTGAGTGAATAATTTAATTCTTTAAATTATTATTTAAATAATTTAATTTTAAATACATTTAAATTTAAAATTTAAAACACAATAAATAAATTTAAAATTAAATTTAAAATAAACTTTAAATTTAAAATAATTTTTAAAATTTTTATTTATTTATTCATTTGGCTGTGCTGGGTTTCAGTTGCAGCACACACTACCTTTGAGCTGAAGCATGTGGGCTCTAGTTCCCTGACCCAGTGGGGAACTAGATCGAACCCAGGGATCAAGCCCAGGTCCTCTGCATTGAAAGTGTGGGGTCTCAGCCACCGGACTACTGGGGAAGCCCCTAATTTTTTATATGCAGTAACCAAAGAGTCTCATCAAGATGTTTGCTATGCCACCTGCTGCCCAGGGGACTTTGGCACCTTATCACACTTTCTCTGAACTGAACCATCTTCATGTACCAAATTTCCATGACAATCAGACAGCAGAGAAGTAGAATCTAAAAAGTGAACTGATGTGTGCAAACATCACCTAACCTGACACATAGTGGGACGGTTCCTGACACTAGACATTTGATTATTTAATCTCCACTCCTTCAGAGCGAGGGTGGAACTGTCTTTTGCATTGCTAAGCAATAACACAGATGTCACTGGAATTAGTATTTAAAGAACAAATTGATTGGCAACATGAATTTTAACACCTGAATTTTTCAGAAGAAAGTGCAGAAATCCAGTGAAAGGGGAAGCCTCTCCACTTCCCCTTGATCCTCACTGAGTGGATTTCAGAGTGCTGCAGCTGAAATCCAGCACAGCCAAATGAATAAATAAATACAAAATTTAAAAATTATTTTAAATGTAAACTTTATTTTAAATTTAATTTTAAATTTATTTATTTATTGTGTTTTAAATTTAAATGTATTCAAATTGATCCTCATTGGGATCAATTTTTAATTACTCCTCCAAATTTAGAAATCATCATAGAGTTCTATCTCAAAGCTTGGCCCTAAGACCCAAAGTCTAATTTTTTAATCAATTATTCCCTTCTTTCATATCCAGTGCTAATAATAAGGGGAGATGCAATTGATTGCAGAAGGTCTTGCCTCAGGTATATCAGTTAGCCCAGGAAGGAGGTCAGAAATTCCACTTGTGATAGTGAGTGGATAAAGAGTAGTACAAAACTGAGGGTCAATATTTACTTGAGATAAATCATTAGCATGTTCAAAAAGAAGCAGAGTAGAGATTGGGGGAAAGGAGAGAAAAACTGGTATAACAATAAGCCTGTCTCCCAGAGTCACATAAAAAAACTCACCAATCTAGAAATGGTGAAGAATTGTGCCAGCCATGGATGTGAATTGGACCAAAAAAAAGGCTAAGTGCTGAAGAATTGATGCTTTTGAACTGTGGTGCTGGAGAAGACTCTTGAGAGTCCCTTGGACAGCAAGGAAATCAAACCAGACAATCCTAAAGGAAATCAACCCTGAATAGTCATTTGAAGGGCCAGTGCTGAAGCTGAAGCTCCAATACTTTGGCCACCAGATGCAAAGAACTGACTCCTTGAGAAAGACCCTGATGCTGGGAAAAATTGAGAGCAGGAGGAGAAGGGAATGACAGAGAATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAGTTTGAACAAGCTCTGGGAGTTGGTGATGGAGATGGAAGCCTGGTATACTGCAGTCCATGGGGTCACAAAGAGTCAGACATGACTGAGCAATTGAACTGAACTGAAGTAGTTTATCAGTGTCTATAAAGATTCTTGGAGAAGGCAATGGCAACCCACTCCTGTACTCTTGCCTGGAAGATCCCATGGGCGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCAGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGAGACAGAGAAGCCTGGTGTGCTGCCATCTATGGGGTCATACAGAGTTGGACACGACTGAAGCAACTTAGCACCAGCATAGATTCTTGGTCGTATTCTCCAAGAATATGGAGATCCTTCATATACATCTGTGATGTAGAATGTTGGACAAATTATTGGGTCCATAGACAAGTCTCACATCCATCAGGACCACAGTCATGGTCCATGGATACATTCTTGAGGTCTGGAAGAATTGCTTACATTTCAGATTCTCTTCCCAATGTTCAATGAGAACTGTTCAGTCAATGAGAACTTGGATTTTTATTATTGCTTCAAGACCACAAAAGATTACTTATGGATGTAGCTTTCTGGTTCTGAACGAAGACAACCAATTCTGAATTCTAAAATGTTCGTGAAATCCTAATACCATTTTATTTGCTTGAGATTGTAATCTGAGCAAAGCCATGGAGAAACAGAACACACACAAACATGATCTAATAATTTTCCAATTATTTTCATCCTGCATGCATAAGGTCATTTCAGCCTTGATCCTTTGCTGCAAAGTAAACACTGCACATGTATAAATAGAGATGGTTTAAGTGCAAATATTTACTGAACGCATCGCAGTGCACAGAGCTCTGGGAACTGACGTGTGGGAAGGTCAACAGGAACTGTGACATGTGATCTTTGGTGCCTCCTGCCATGGTTAACAATCTCCTTGCTAGGACATCTGAAAGTGGAGCTAAGAGAAAGAGAAAAAAACAAGAGGATCAGGATATTTCTGAGTCCTCTGGCCATTCCTATCTTGAGCCATGCATCCCCTGGACAGCACGGATGGTGTGTTCTCAGATGATAGAGTAACCGCACCTTGGTTTACCTTAGAAGTGATGGACTCTGTGTGTGGTGTGTGTGTGTGTGTGTGTATTTGTCTAGCCACCAGCAGTGCCACCCTTCAGGAAACACGGAAGGCTTTGTATCAACCCTGCCCCAGAGTCCTGCTGCAGCTGGCAGGGTTGGGATTTGCTCTGTGCCATAGTCACACTCACAGCCACACAGTAGACCAGGGCATCCCAGGAGGCCTTCCACCCTGTGAGCATCAAAACTCCCTGCACTATGGGGATCCTCACATGGGCTCCTGGGGCCCCCAGAGGTGTCCGGTGGTGATCGGGAAGCCCTTGGGGGACTCCCTGCTCTGCTTCAGGAAGAGCCCCTCCACTTCCATCATGTTGTACATGGGTCTCCCACATGATACTTTAAAAGATTTTCCCACTTTAAGGCTTTTTGGAAACCACAGCTCTTGTGAGAGCAAAGGCCAGACATACTGGAGTGTGATGGAGACTGCTTGGGTGTGAGGATACACCCATCGTGGGTATGTCCCTGCACCCCCATGTCCCCTGCTCATGGCTCAGAGAAGCCACGTGGAGCCGTGGCTCCAGTGGGCCCAGGTGTGCTGGTGGGCCACATGCACACACAGGTGCACACACACATCACACACATCACATACACACATGGCACACATGCACACACACGCAGTACACACATACCACATGCACTATGCACATAGACTTACACTATACATAACACACCACACATACCACATACACATACACCACACAAATACGCAATATGCACAAACCACACACACCACAAACACGTACTTACACTATGCATAGCACACACACTCTACACACATCACGTACACATGTGACAAGCATGCACATGTACACAATATACACACACCACACGCATGCACACATAAACTGCATACACACCACAAACACCACCACACATACCAGACACACACACACTATATACATACACTCACATGACACGTACCATCTGCACCACACACACCACGTACACATACATTACGCATATGCACGCACACTATAAACACATATTACACATACCGCACACACACCATATATCATGTACACCACATACACACAAACACACCATTTGCACAGTACCCATGCAGACATACTATACACACACATCTCACACATCACACAAATCACAAAGCACACATCACATACACAAATACTGCACACACCAAACAAGCCATAAACCACACACACACACACACACACACGCACACACACCCCTGCCTATGGCTGATCATTGAGGCCAGAAAAATGATGATGATAAAAATGAAGTTGACCAAAGTGTCTGTAAGATCCTTAGACATCTGTCTTACTTCAAATCAAGGCAGGGTTTTTACAGAGCAATAACATTGATGTTTCACATTAAGATACACTATTAGATGGCTGGACTATATGGATGCATTTTCTATGTTGTACAGCAAATCCTCAAAACCTTAAAATACAAATTCATTATCTGACCATCTCCTGGGGTCAGGAGTCCAGGTACCGTTGTCTGAGTACCCCCGACTCAGGACCTCACAGGCTGAAATCACCATGGCTACTGGGCCTGGAGTCTCATCTGAGGTTAGGTTCTCACCCAAGTTCACTGGTGTGCATGCTTAGTCGTGTCCAACTCTTTGTGACACTATGGACCATAGCCTGCCAAGCTCCTCTATTCACAGGATTCTCCAGGCAAGACAGAGAGAGTGAAAGTCACTCAGTTGTGTCCGACTCTTTGCGACCCCATAGACTACAATGGAATTCTCCAGGTCAGAATACAGGAGTGGGTGGCCGTTCCCTTCTCCAGGGGATCTTTCCAACCCAGAGATCGATCCCAGGTCTCCCACATTGCAGATGGATTCTTTACCAGCTGAGCCACAAGGGAAACCCAAGAACACTGAAGTGGGTAGCCTATTCCTTTTCCAGGGGATCTTCTTGACCCAGGAATCAAACCAGGGTCTCCTGCATTGCAGGCAAATTCTTTACCAACTGAGCTAAGAGGGAAGCCCCACACAAGAATCCTGGGGTAGATTTCTATGTTCTCCTCCAGGGGATCTTCACAGCCTAGGGATCAAACCCACGTCTCTTATGTCTCCTGCATTGGCAGGCAGGTTCTTTACCTGCTGGCCACATAGGAAACCCAAGCTCACTGGTGTTGAGCAGGATCCATTTCCGTGTGACCTCAGGGCTGAGACCATCTTCTTGGCTCCAAGAGGCCATGCTCCCATCCCTGTCATGTGGCCAAGCAGGGTCTCATGGTCATGTGGTCACAGTGGGGCAGCTTGCCCCTCGTCACCCACAGGACCTTGTCTCTACAGTTCTAACCCCTGTCTGACCTCTAGACCCTCTTTTAAGCTGCTCATCTGATTAGGTCTGGCCCACCCAAGGTACTCCCCTTTCAATTAACTTAAAGCCAACTGATTGTGTCCTTAATATATCTGCAAAATCCCTTCACCTTTGCACAATATGTAACCTGATTTTGAGAATTATCCATCCATCACAGTGACAGGTACCACCTACATGGAGGGGGAAGTAATTACGCAGGTGTGTACATCAGGGGGTGAGAATCTTGGGCGCTGTCTTAGAACCCTGCCTGCCACACTGAGCTCATTTAGAAAGTCTGCTTGGAGGACCTCATATGTTCCAGACACTGGCCAGGGCCCTGGAGACACAGGAGACAACAGGATGACCTGGTGAGACTTGCAGGCTGGTGGGGGAGTCAGATATTTACCAGTCACTCCTGAGTGGGTTACGACCCCAAGTATCATGAAGAAGAGTCTTCAGAGAACCCGGGAGTCCTAACCTCATCAAAGCTGGTGACAGAGAGGGTTTTCTTGAGAAAGTGGGAGTTAGCAGAAGATGAGTGATGAGTAAGAGTTGTCAAAGACGAGGTGGAGGGTGGGAAATGACCCCAGGCAAGAGGAGCCTAAGGCTGTCGGTCATCATGTGTCAGTGACCTGATGTGAGAGATGCACCCCACAGCTGGGGACCTAAAATAGGGTCCAGTTCTAAGGAATGACATAGAGCTGGGAAGAAAGCCCAGTATCTGACTGGATTTGTCCACATGGAGGTTTAAAGGGCAACTTTACATGTCCACTGACAGACAGTGAGGAGGGAAGAGAAATTCTAGTTTTGGCTTTTGCAACCAAGAAGATGGCTGTGCCAGTCCCTGCACTAGGGGAGGAGGGAGGTGTCAGAGAGAAGGTGGTGAGCCCTGTTTGGAAAAGGATAGTTCTAAGGTTTGTGAGTCAAGAGTGGAAATGCCGGGGTGATCGGATATTTGTTAGATGTATGAGCTCTCAGAGCACCTCGCTGCAGAGAGCAGGTCCAGGCACTTGCTCTGCAACAAGAGAAGCTACAGCAACGAGAAACCTGTGCACCACAAGTAGAGAAAGCCCACACACAGCAACAAACATCCAGCACAGCCAAAATAAATGAATAAATAAAATGTTTAACTGACTAAAAGGAAACACCAGGGAGGAAGGGCATTCAGGCTAAGTTGACCTCACTGGAATTTTGCAGAAGGCAAATGAGGATGATCAGATATTACCTAGGGGTGACAGAAAATGGAGACTTTGATCAGACATTGTGGGAATTTCAAGTGTAGTATGGCAGCTTCCCAGGTGGAGCAGCAGTAAAGAATCTGTCTGCAATGTAGGAGATGCAGGAAACATGGATTCAATCCCCAAGTCAGGAAAATCCCCTGGAAGAGGAAACGGCAACCCACTCCAGTATTCTTGCCTGGGAAAGCCCATGGACACAGGAGCCTGGCAGGCTACAGTCCATGGGGTCACAGAGTTGGACATGACTGAGTGACTGAGCTAACTGATTGAGCAGGATTCTTGTTGAAGTGAGCTTTTAGAGGACATGGCCAAGAATAGGGCTTAGGCAGTTCTCAGATCATTGGTCCAAGATTTGGCCCAAGATTGTGTTAGCACCCAGGGTGGCTGTAACAATGTCCCTCAGACTGGGGGACCAACAGCAGGAATGTGTCCTCTCACGGTTCTGGAGGCCAGAAGGTCAAGGTCAGGGTGTAGGCAGGGTCTGTTCCTCCAGAGGGCTGTGAGGGAGCACAGCTCCCCGGCTTGCAGGGCATCTTCTCCCTGTCTTTACATCATTTCCCCCTGCCACGGCCTCTCTGTGTCTACACCTCCTTTTTCACAAAGACACCAGCCACACTGGGTCAGGGCTCCCCCAAATGACCCCTTTAACTTGATTGTCTCTGTAAAGATACCATCTCCAGATAAGGTCACTTCCTGGGGTAGTAGAGTTAGAGCTTCCACATGTGGGTGTCAACTGGGAAAAAAAAAAAGCACAACATGAGAATTGTGAATTAAGTTTTATTTGTGGCATAATGAGGACTGTATCTTGGGAGACAGGTTTTCAGATAGCTCTGAGAAACTACCCCAAAGAAGTAGGGGGATGGTCAGTGTATATATGATTTTTGTGAAGGGGTTACTTACAGTCAAACATGTTTTGGCAGAGACTCACTGCTGGTCATAAGGAGCAGGTGTCACCATGAAAGATTTTAGTGCTTTGGTAGATATGAGGAGAGGCAAGAAGTGGGCTCGTAAAATCTTCTGCTCTATCTGAAGACTTGTTCTGCCAGTTCTTCCCAGAGCACACAGGGCCGCATTCCTGATTTCCACACTGAACTCCTTTCCAGAGGTGTTAAAAGTCAGAAGTTGCAGTGGCCGTGATTTAATCCTTGTAGAGGCAGATTGGCAAGTACCAGTTTGTAGTTTGCATAGGTTTGGGGGGACACAATTCAGACCCCAACACTGACTCCTGACGAGCAGAGCAGAGAGCGTGGCCAGGCCTGTGGGGTCCTGTGGGGTAGGGGGACAGAGTTGGGTGCAGCACTGGGGGAAGGGGGAAGTACCCTCATTTTGTGACTAAATATCCTACTTTTCCAG
Seq C2 exon
TTCCAGGCCCCCCTGCCGGGGTCAAGGCGGCAGCGGCCTCAGCCTCCATGGTCTTCGTGTCTTGGCTGCCACCCCTCAAGCTGAATGGCATCATCCGAAAGTACACGGTCTTCTGCTCGCACCCCTACCCCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754:ENSBTAT00000006240:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
NA
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development