MmuINT0053354 @ mm10
Intron Retention
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96673665-96678539:-
Coord C1 exon
chr16:96678384-96678539
Coord A exon
chr16:96673799-96678383
Coord C2 exon
chr16:96673665-96673798
Length
4585 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
ACTAACCCTGGATTTTCCAGTTC
3' ss Score
6.33
Exon sequences
Seq C1 exon
AGCTGGGCGAGATTAAGAACGTCACCACCACGCAGCCTTCCTTGGAGTTGGATGGACTAGAGAAATACACCAACTACAGTATCCAGGTCCTGGCCTTCACCCGTGCAGGGGATGGCGTCCGGAGCGAGCAGATCTTTACCCGTACCAAGGAGGACG
Seq A exon
GTGAGACATAGGGTGGGCACTGAGTGGGGAATTCAGATCTGAAATGTCCTGGGACACACAAGGCTCATGCCTGGTCTGAAGCCACACTGGGAAGGCAGGTTGGAAGGCCCACCTTTGACATTTGACCTTTGACATTTGCCCATCAATCAACTCTTGACCTTGTTCATTCCAGTCTCCCCTGCCCTTCCACATAGCCCAGCATGAGTCAGGCCTTCCACCCCCAGCTAGTGGCCAAGTACCTGGCTTGATGTAGCCATCCACTAGTCCTAGCTCCTATAAATTTTTTCCTCCTCTTCCCTCTCCTTCCCCCTCCCCTCACATCTCCCCCTCTTCCTCCCCATTGCTCCTCCCTTTCTTTCTCTCTTCCCTCCTCTCTATCTCTCCCTCCTTCTTCTCCTCTTCTTCTCTAGCTCTTTCTTTTTTCATTGTTTGTTTGTTTCAACAAAACCCACCCTTTACCCAAGGCCTTCATGCTTGCGGCACGGTTTTGTGCTCTGTTCAGATAACTTAAATTACTGCCAGGGTCAGTTCTTTTGCTTCAGAATTGTGCACTGGCCTCTAAGCCTTACTCTACATGAGTTGGATCACTTCAGAAAGGCTTGAATTCAAAGCTTCATGACTTTTTTTTTTTAATGAATTCTTACAAGGACTCATGCTGACTAAGTAGGTTTTAACTCCCATCTGGCTCCAGACCAGCACTTGGCACTCCATACAAGCTGGACTGCAGGTTTTATTATTTTAACAACACCCCCCTACCCCCGCTCCCGTTTCCTTATCTGGGCTGTTTGAGGAGCAGTGTAGGCTTTAGAGCACAGCAGAGCAGTGGAGAGGAAAACAGTTACTCTGTGAAGAAAGATGTAGCCAGTATCAAACAGGTGCCCAGGAAGCTTTGCAGAAGCACCCAGACACAGGCTGACCCAGGACACCGCAGCACCTAAGCACTGTGTAGACTTGATCTGAACCTATTCACCTTCCTCTCAAGGCAGTGGGGCAGGTTAGGAAGGAGAGCCAGGGCTCCCTGTAGCCCATTATGTCACCAGCTGGTAGTGGCAAGTTTGGTGTCTGCTCTCTCAGCTGCATGGACTCCAGGCATACTGTTTTTACATTCCAGCCCACGTGCAGAAGTGAAGCTTGGGATGCAAGGATGGTACCTGTTCATCTCCATCCTATCCCCTGTCTATACCTCCTTGATCAACAGACATCCAGAGGGTTCCAATCCTTTACACTGCTCTCCCCTCAGGGAGCCAGGCCCAGTTGTCTCTTCTAAAAATCCCATCTACACACCCCCTGTGGTACTGTACCAACTTTCCAGGCCTCCTTAGAAGTGAGTTGTGTGCACAGTGGTCAGCCCTCACTTGCTTTAGTTTTTTTCTAGAACACACAAGCCATTCTTCCCCAAGGATGTGCAGCTGTTGGCCAGTTCTACTCAAAGACATTGGCTCATCTCAGGAAATATAATGTCAAAATGCAGTGTCCTGAGGAAGTTGCTCAAGTCTTGAGGCACCCACAACGTTGTCCTGAATGACAAGAGCTGCCATTTAATTGTAAGGCATGGTAGAGAGGTGTGTGGATTCTGGTTCTGTGCCCTGCTACCCACAGGCTCCTGAGCACCTTACATTCTCAGAACAACAGGGAACCCAGTTGCTACAGCCCTCAGGCTGCACTGACCAATGTGTGGAAACAGAAGTGAGGTAACCATATCTCACACTGATGTGCAGAAGGCTGCTGCCCCTCACCACACATTCATTCTTTGCTCTCTCCTCCCTCGGGGCAGGGGGAAATATTTTTTTTCAGTCACTAACTGATGATACAGATATCTCTAGAATAATTATTTAAGAAGATTGACCTGCAGCATAAGATTTGACATCAGCATTTTTAAGGAAAATATATGGAAATCCAATAAAGAGGGAAGGTCCCACAGCTCCCATCAACTGGAAAACTGGAATCCATTTTTAATTAGTCATCCAGTTTTAGAAACTGTAGTTTTGACCCTGAGGCCTAAGGTCTAACCCGCCTGTCCACTGGTCTCTACACTTATATCTGGTACAGGTAATGTATGGAAAAATGATTGGCTATGGACAACCCCACAAGACCCTGCGGAGGAAGGTAGAAAAGTCCACTCATCCTGGTGCTGTGGGACAAAGGGAACCCAGAATTGGATGCCAGTATTTATTTAAAATAATTTGCCATTTCAAAGAGAAATGGAGCAAAGACTGGATGGAGAGAAGGAAACAAAAGATTTAGTAATTTAGAAATGACAGTTACAGGGGAGGGGGTGGGGGGGTGGTCGGGTGGGGAAAAAAAAAAAGAAGAAATGACAGTGACCTGGTTTGCTTTCTGTTAATGATAACACTATCACCAGAAGAGGCTGGGGGAGGATAGGGTTTATTTCATCTTCCACCTCACAGTCCATCATTGAGGGAAGTCAGGGCAGGAACCTGGAGGCAGGATCTGAAGCAGAGGCCACAGGGAATGCTGCTTACCTGCCTGTTCCTCATGGCTTACCTTCTTCTATAGCACAGACCCACTGCCCAGGGGTGGCCCTGTTCACAGTGGGCTGGACTGTCCTGCATCAATCACTGATCAAGAAAATGTCCCCACCATCTTCCCCACAGGCCAACCTGATGAAGGCATTTTTTTAGTTGAAGTTCCCACATGGCCCTTATTTGTGTCAAGTAGAAAAACAACAACAACAAAAAACCTATTCAGCTCAGTAGGGTGCTTACCAACCACCATTAGAAACCTAGTATCTCATATAAACGGATGTTTACACAGGGTGTTTGTTTAAAGAACAACTCTCTTGTTTAGTTTCTCAGTCTCTAAAGATTCTTTGGCTTACAGACATGTTCTCAGGCCTGTGGTAGATTTGTGCCCATTCTGACAGAGAGCCTCAAATCCATAAATTGTAATTCTGTGTCAGTGGCTGTCACCTTGGGGATGAGAATTGTTGAATCGGTGACTTGCTATGTGGCTTCATTCTTTTGAGCACAAAGAATACCGAACTGTTAAAACATCTGTGGAGTCTCAATATCCTTCTTATTTGCCCAGACTACAACTCAAGCGTAGCCACGCCAGGAGAGAACACAGACAGAGCATGATGTATTAATTTTCAGTTGTGATTTTCATTCCGAGGCATGTCCATCCTCTATGAAAAAGTAAACACACTAAATGTATACATAGAGCCAGCTCTGTTTAAATTTAAATATTTACTGAGCATATCATTAATGCTCGTGTGTCTGGGGCCCACGGTAGACGGGATGTGTGATCTCTGTGTCCACCCCACATGGCATGGGAAGTGTTTCTCTGGTGAGATAGATGAAGGTTAAAAAAAAATGAACATGAGAATCCAGATAACCCCATGACCACCTATCCCCTGAGCTTTGCGTAGCGCAAAAAGCACGAGAGCTTTTCCATTGCTGTGATAAAAACCTGACAAAGGCAACTTAAGAAAGAAAGGGTTCGTTTTGGTCTATGGCCTCAGAAAAAAATGGAGTCTGACATGGTGAGGAGAGCAGAGCAAAGCAGCAGTCAGGGCATCCACAGTGCAGGAGCAGGAAGCTGGCTGGTCATACTCTAAGAAGCAGAGAGGAAGATGAGAGGGTGGGTGGCTGTAAACTCTCAAAGTGATGTGCTCCCTCCAGCAGCCTTCCCACCTAACTTACCAAAAGCCTCACTTCTCTAAACAGAGACACCAACTGAGAACCAAGGTGTTCAAACAGTAAGCTTTAGGGGACAGTTCTCATTCAAACCATCATGGAGAGTATGCTGATGTATGACTGTATAGACTTAAAGATGGAGTGTGTGTGAGATAGAGTGTGTGTGTGGTATGTGTGTGTGTTTGCACAACCGACTGCCATATTGCTCTTCAGTAGGAACTGGAGGCTTTGTGCCCTGTGAGTATATCAGTCCTGTCTAGAATTCTAAGACCTCAGAATATAGGGATGTGCCTGGGCAGCTGTTGTGAGCCAATAAACAACAGCATTGGGTTCCTGTCATGCTCCTCAGCCCTCACCCCACCCCACCCTCACCCTTACCCCACCTTCACCCTCATCCCCAACTCTCATCCCACCCTCACCCCTACCCTCATCCCAACCTCACCCTCATCCCCAACCTTCATCCCGGACCTCACCCTCACCCCCAACGCTCACTCCACCCTCATCCCCACAACTCCTAACAGCATGACAGTTCACTTGAGGACAGGAAGATTCTGACACTTCAAAGGATTCTGACACCCACTGTCTCTAACCCTTCGTCTCTCTTATAAGGGGCCTGGCCCATCTGCCAGGTCTTATGCTCTTTTCTTGCTGTCTTTCCCAGTTTCCCTCAAGCCTTGGAGGAAGTGATATAGATTTCCCAGTTGTGACTGGGCACTCTACAAACGGTGCCTTGGTTGCCTTTTTTTAAAGATCCTATCTCCAAATAAAGTGTTAGGGCTCAGTGTATTGATATGGTTCAGTTATGAGGACACACTGGGATCCTGGACACTGGTGCTAGACCACTAGAGCAGTCTCTGGGAGGAGAGAGTGTCACCTGGGGAGCCATGGGAAGCTACATTCCACCCTGTGACTAACCCTGGATTTTCCAG
Seq C2 exon
TTCCAGGTCCTCCTGCCGGTGTCAAGGCGGCGGCAGCCTCGGCCTCCATGGTCTTCGTGTCCTGGCTGCCCCCGCTGAAGCTGAACGGCATCATTCGGAAGTACACAGTGTTCTGCTCCCATCCCTACCCTACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272:ENSMUST00000056102:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.044
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
NA
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types