GgaINT0111560 @ galGal4
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107672357-107681290:-
Coord C1 exon
chr1:107681135-107681290
Coord A exon
chr1:107672491-107681134
Coord C2 exon
chr1:107672357-107672490
Length
8644 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
AACACAGCTTTTCTCTCCAGTTC
3' ss Score
6.31
Exon sequences
Seq C1 exon
AGCTAGGAGAAATAAGGAATGTCACTACTACACAGCCATCTCTAGAGCTTGATGGTCTGGAAAAATACACCAACTACAGCATTCAGGTGCTGGCTTTCACACGAGCTGGAGATGGAGTGAGAAGTGAACAGATTTTCACCCGCACTAAAGAAGATG
Seq A exon
GTAAGGAGTAAAGCATTTCCATTCCCACTTCCACAAGAGGCTTGTATGCCTCAAGCTTTTAAAATAGTGCAAATATTGTTTACAAACAGTCAGAGTGAGGTTTCTATCTGAGGATCTTGAATTAGCAGCACACTGATAACAGGGTGCACCCACATCTTTGAAAACAGTCTGAGTGTTTCCAGGACTCCGGTTCAGATTAGCCAGAAGTTTGTAGATAATTCTCATGATCTGAACAGGTTTATCTTTACTTTTGTTTTCAAATACCTCAGGATCTAATAGGAGAATTTTGAGCTTTTGAGTTAATTCAAAATGATTGAAAAGGGGGAAAGAAGAAATGACTGTTCTGTTATGTTCTTACATAACTGAGATGCCTCTAAGAAGGTTTTCTTCAATATAAGACAGAAACTTAGTCCAAACACTACTTCTTTCAGAAGCAAAATGGAGAACAAAAATCTCCTGCCTTTTTCATTGATTAGAGCATGGAAAATTTAAGTCCTAATACTGAAAATTTAAGTTTTCTTAATTATGTTATGATTATTTGCTCCTTGTTCTATGTCAACATACTTTATACAACCCATTATTTTGATCAAAGCTGTGTTAGCATAAAATAAGTGAATGCTTTATAGCTGAGATATATGAGGAAAGTTAGGCATATGGCAATATTGGTTAATGTAGGCCTATTTCCAGCACTCAGTAAACATAGTCATCACTGAGATCCTCATTCAACTTGCAGGAATGGCTCTGTATAAAACTGTCTCAGAGTACTGCATCTAGTCTGAAACTGCCAAGGCCAGTCTGATCAGACGTAGACTTTACTCTCTTGGACACTGAACCCACTCTAAAGTCCTTTAACTACTTTGGAACATCAGAATCCTGTGTCAGATGTTCTTGAAACAAAAATGCTTGGAGAAAGATGGTTTTATCTTGAAGAAGAATCTAAGAAATAATGGAGAATTGCAAGATCACCTGCTACGTTTTCAAGTTACTTTTTTTTTTTTTTAGTAGATGCCAGCATCACAGCTTTTCCTGGAATATTCTCTGAAAATAAAAGCTCTCACTCCAGAGCCTTGAGACTGAGACTTAAACCATAGGCAGACTTGGGAGTTGCTATACTCTGCTTCAGAAGTTCAGGGGCAGCTAGCAGAGATATAATTCATGTTAGAGACAGCAAGAATGTACTTACTGGCCTACACCTTTGTACAGCATTGCAGCCTGCTGCTTTATGTGTTAAACTGGCCTTACATCTCAAATGGGCCAGAGAGACATATTTCCAGAAATCCTTGAAAAGCCCAACAGTAGAAATAACCTCTGGCCCTTGGATTGGCATTTCAAGGTATAAATGCAAGGGAAGTCATAAGGGCTTTTTGAGAAGCCCTTGTATTGATTCTTTTTGAGTTTAAAAAAATTGAAGGGAACCATTAGCTACCAAAACTTGCTTGAATGTGGGTAACATCTGGGCTCTGTATGAAGTTCTTCCAGCTTTTGAAATTGAACAGATGACAGAATTGGTGCCTGCAGTATCTCTGTCTCTTATCTGGAACAACAGTAGAGTGTTTTAATGTTCCTGAAATTTTCCTGACCTCGGGCCAAGACCACCCCCCTGCACTAAAGAGCATTGCAGCCATCACTGATGTTTACTAAGCTTGGCTCAAAAAATTGCAGTAGTGGGGACTTCATAGACTCCCAAAATATCCTGGACCAATTAAGAAATATCCCACGAAGGGCTACAAAGATGGTGAAGGTTTTAGAGGGGAAGACATATGACTTGTGGCTGAAGTCCAGATCAGAGGAGGCTGAGAGAAGGCCTCATGGTGGCCTACAGCTCTCCTCACTATTGCACAGTGACAGTGCCCGAGGGAATGGCATGGAACTGTTTCAGGGGAGGGGCAGCTGGGGGTTAGGGAAAGGGGTCTGCACCAGAGGGCAGTGGGCACGGCCCCCAGTGCTGGAGTTCAGGAAGCATCTGGACAGTGCTCTCAGATGTAGGGTTTGATGTTGGGTGGTCCTGTGTGGAGCCAGGAGCTGGACTTCCTGATCCTCGTGGGTCCCTTCCAATTTGGGTTATTCTATGATAATACAATCTCCACTGCTAAGAAGTATGTTGAATACTTCCCTCTGCTTTTCTGGCCAGGGAGATCAATGGACGACTTCTTGCTTTATAAAAGTATTTTTTATTGGAAGGGTTGCTGTGCCTGTTGTTCCCTGCACTTTTCCATCCTATCTGTTTCCATTTTAAAACAGAGTCCTGAAATAGTAGAAGATCCTCTTTTTTTTTTGTTTTGTTTTTATTTTTATTTTTTATTTTTCTTAACTCCCTTCTATCTAGTTTGCTTTTCCCTAAATCTTGGTAGCTCTTTTGCTATCTCTGTTTCTGAGTTCAGACAGGCCCTGAGATCTGGGAAACACATATCATCTGCTTAAGTTTGGCTGCTGTGCAATGGCTCATATCTTATCTTTAATCCCTCTGGCAATGAAGCCATAGCGCTGTTCAGCAGTAATTCACCCTGAGGCAGTATGACTAAACTTTTCAGATGTTTTGTGTTGCCTCATAGTGATTCCACTCATTAAATCTTTTGTCCAGAAAAACTAAACTGAAAGGTGTTACTAAAAAATGCAGTGATTTCATGTTTTGCTTCAGCTTGACAATTTTTTATTAAGAGCAATAAAAGTCTTAAGTGGAATACACAAGGGGCTGCCATGAAAAATAAGCTCTAACTCAAGTCCCACATCTAAACATCCTTAAGGCTATGGAAGTTAAATGGAAAAAAGAGCGTTCATACTGACATCTGTAAGTATCCAGTAGATGCCTTGATCCTCAGGAATTTTTTCTGTAATATTCTAAGGAAGAGAGACTCCTGTAGAGGAACATTCAGTAGGGCTAATTTCAGCGCATCCAAAAGATTCTACTCTGAAGTTATTTTTGAGCATTATCTCAGCAGGGGGAGTACAAATAATTGCAATCTTAACAGAGCTTAGATCTGGAAATATTATATTTCTACTCCCAGACCGTCTTTTGTTAAAATTGTGAACTAAGATATTCCACTCTCCTCTAATAAAAATCTGTAATTCTGAGACATTTTTAAGTGGCTGCCAAGCCCTCCATATCATTATTACTACAAGACCTTATCACACCATTGATTTCTTTTCCTTTTTTCATTTCTTTTGGATTAGAGGAAACTTTTCTTTGTAAAATCAATGGTGCACCATGATCCCTTGCTGCTTTTGAAAGGCAGATCGTAGCCTCCTGTCACTTCTCTGCTGCTGTTTGGTTTAGAGACATCTGGCCGGAATTTCTTTTGCGGGTCTGAAATTTCCAGTGTGGCAAAATAAGAGTATCCCAGGGAGTAAAGCAGTCATCCTGAATGAAATGAATTGAAGCTTCGATTTCTTGTAACATTTCGTACTTATTTTAGACACCAGGGGTCAGACACCACTGCTGATCAGCTTATGAAATGGGAATAGTTCTAGCAAATAGTAGGGAATGAGCTATCCTCTCAATGTGATCATATTTTGGCTTTTGTCTCATTTTTGGTTGTGGTGGTGTTATCACTTTCTCTTGAAGCTCCCCTTGGCAGAAACAGAAGTGAAGCAGAAATGCCTATTTTTTTAAGAACTGATTGTGTTTTTGTCCCTTGCCCTTTCTACTTTGTACAGAGTTTTTAACAAGCTGGTTCTCTTCTTCACCCAAGGACTCATTTTGTTACGTCGTTTAAAAGGGAAGTTTCTTCAAATTCTCTTCCTCACACTGTTCAAAGTATAGCTTCAAAAGCTACCCTACTCAGTAGCAATGGGGAACAATGAATTTTCTCTCTGTTTCTGTGTTGCAAATATGATATTATAAAGCCAAGTTCAAGAAAATGTTTGCTCTCCATATAAGCTGGATGCACTGCACAGCACCTCAGCAGACTGGAGCAGACCTCCAGCCTTGGGCAGAAGGGATGAACAGAGGACACGGCTCCCAGGGAAAGCTTCCTGTAGCTGGCAATTAGGCCTGGAATGGCTGCTTGTCACTTGGTGCCCAGCAGACATTGCTTCTGGGGTTTATGAGATGCAGGAGGAAGGAGGAATCATTGAATCGTTGAATATCCTGCGTTGGAATGGACCCACAAGGATCATCAAATCCAACTCCCAGCTCCACGCAGGACCACCCAAAAATCACACCATATGTCTGAGAGCATTGTCCAGATACATCTTGAACTCTGTCAGCTTGGGGCCATGCCCATTGCTCCTCTGGGGAGCCTGTTTCATGGGGAGGACTAACACTAAATCCGTTTATGTAATCAAGGCTCAATTCTGCCTGAATCCAATGAGATTTCCCCCCTCTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTGAACATTATATTCTTGGTGATCGGTGTGATAGGGGTGGATGTATAGATACTGTCTGATGAAGCTCCATATTTTTTCTTAATGGAATGAGCGTAAATCCAATCAAAGTATGCTCATTGCTCAACTCTGCATAGGCTCTACCCGCTTGTGATAGGGGTGGCTGTGTAATTCACCTCTGTCCTGGAGAGGTTTATATGGCTTAAGACTGGGCACTGTGTTGTGAATTTGCCAATAACGTACCTGTAATACATTATGTTATTTTATTTAGTTATTTTTAGAGGTCTCTGATTCTATCTTTTTGACTAGCAAAAGAAGGTAGAGAATATTAAATGCCCGCCATGTGGAACTGTCTGAATTTGGTAGGAATGATCTAATTTAATAGAGGCCAGTTCAGAGGGAAGGAGATTTGGACAACATCTGTGAATGTATTTTAGCTAGAATAAATTGAAATTTTAGGTGGAATACATACATTAACATAGGACTACTGGAAGTAATAAGGATTTTACTTAGTTTTGTTTTTCACAAATGTAACAGTTCTTAGGACAGTCTTGTGTGGTGTGGTATTAGAAATCTCTCAGGGAGCCAGGTTCATTTTTCTGATATAATGGTTATATTACTCCTAAATGCACAGCACTTGCCTCCCTGCTATTCAGTACTGTGAAGAAAAATGGTGATAATTTAACTGCTTATGAAAAAGGGAATGAGAAAGTTCCTGGAGCTCCTCCCCATTATCCTGCACATCTAAATGCAGTTCCCTGGACTAGTCATGTCAGGATAATTGCTTTCTCTGTGTTTGCATTTCACTTGCAGTGTCAAGAATACAAAGTGTTCTCGTCTACATGAAAGCTGCATGCTATTTCTGTGTCTCTGAAAGCCTTGCTAGCTGGAGCATGAGGCTATCTTTGATTTTAAATCAAATGCCAAACCTGGAAGCTGGTAAAGTTGGGTGGAAGCAGTTCTCTGCCTCTCTGTGCTCTGTCTTGTTTTTTGTTTTTTAGCTTCTTACCACTGTTTTACTCCTGGTGACCACAGGGAAAAGAATCTGTGCTATAGCACACATTTAGCTTGTTTTTGCTGGGATCTGTGGGAATCAGCATTCCAAATAAACATCCATGGACATCTCTTTGCAAGGCTGTCTCAGCAAGGCTGCAGGATGCAATGGCAACAAAAGAAATACCTCAAGTTAGCCTAACAAGATGTATCTTTCCTCACCAAGATGCAGTAGACACCACATTCCTCCTGCACAACTTCTTCATATATGAAAGGAACCCATGTTTAGAAACAAATGTTTCAGCTAATGCCACATTAACGCATAATAATCTTGTTTAGTCTCGTGCATGAACAGGAAAATGACTTTATCCTCTGGACAGAGGTCAGTGGTGATCTTTAAAGTATCATAGAATGGCTTATGTTGGAAAGGACCTGAATCAAATGATACCCTGCAAGATTCTTGCCAAGGAATTGTATGTGTTGCCCCACACGCTATCATTTCCACACACAACCTGGCAAAGATAAACAGTATAACAAGAAGAAGCTTAATAATTGAACATTTGGAATAATTTAGGCAACACTGCCAAAACTGTTACCTGATCCCAGCTTCTGATCCAAGAAGGTGGAAGGGCCCTTAGATTAGAAAAGGTTCGGAAATTTGACTACATGACTTCTTGAGTTCTTTCTAACCTCCCATTCTACTGCTCTGTATACCAAACAGAAGTACTGTCCAATGATAAGTCATGTTTTCCACATGTGCCCATTGACTAGAAAATGCGAGGTGAATTCCAAACAGTTGACAGCTATGACCAATTACCATCTGAATGTGTCCCTATAGATCACACCCTAATTTAACAATAAATTACTTGAACCTCATACATCTATTTGCAGTGATTTCCAGAAAACATTACTAACTGTAAAGGAATCCCCCTGTGGGTTAATTAATTACCCTGGAGAGCTGGCTTTCACTCTTCAGCAGCAGGAGCAAATAGCATTTCTAATGAGCTGGGTATAAATAACAAGTTGAATGCTGTCAAGCATCAATATTTACTCTGCATTGGCTAGAACTGCTAGCTGAATTAGCCCCTTTGCAGCAAGTGGCTGGGTTTGCATGCAGTTTATAATCACAACATTCTCACTTGATGCCTTATTAGCTTTCTCAATACATTATAAATAGATAGGGAATATTCAGAAATGTTGCGCTGAGTGATGCTTAACTATCAGTTTTGCTGCATCTTCCATTTGTACCTATATAGACATAAAACTGAAGGTTTCTTTATATGCTTCTTAACATCCAAAGCACTTATCTAAAAAGCTAAGGTCTCAGGCAGCCAGGCTTCTCTTTATAAGGAAATTTTTGTATTTATTTAAACTTGGAGAGCCAAGATTAAGGGTCTACCTATGAAAATCTGCTTGCTGGGAAAGATTTTATCCATCTGTAGAACACAACAAATGTTTTCTGTTAATGTAAAGAAAGCAGATCAAGCTCTGGGACCATTATTTTACTGTGAATTTTAATATTTTGGTAGTTTTTCATGAAATTAGACCAAAAAAATGTGAAATACCTCACAATCCAAAATTCCAGCAGAAAACAGAATCCATCCAAATGTGTTGTTTCATCTTTAATAACCCATGTGATTATTTCCAATATAACATACCTATTTTAATAATTTAACGTGAGTATACTGCACATGCAATGTTAAAAATATCTTGTAAATTATTTATTTTGATGGATTTAATGCTATTTTTAAATATTTTCCTGTTCAAACTTTTTTTTTTTTTTTCCTAGGAATCTTTATTCTACTCTTGCTACTTTGATTAAGTACAAGATTATGTGTATGTGATACTTTATGAATATTCTAGCATGCAGGAGGTTTATTTTCACATTATTATAGGAGCAGTTGCAAAGCTAGAGAATATTGTACAGCGTAACATGAGTTTGAAACAGAACACACACATGAATTCAAAGGACAAGTATGCAAAGAGTTAAGATTATGTATCAAGATTTTTTCATTTCACAGCCTAAGTGTTTTTCATTCAATTTGAGAGAAGCATTTTTCCTTTTTTTTCTTTAACAGCTTTCAATAGCTTACACAGATAGCTAATTAGAAAAATAAATGTGTACATGTAGTGCAGCGCCAGATACAGGTCAGACCTGCTGAGGGCAATTCTAGGGGTAGGACGCTGCTGACACATCATATGACTAGGTGTACCTGGGTCTCATCAGGCAGTGCTAATTGCACAGCAGTAGAGCTCGTTTGCTCTCCACTTCATTAAATTCACAGCTCTACTGTGTGTAGCCATTAAACTGTTCGAATACATATTATTTATACAGTGAATAATCATTTGGCATGAGTTATGTCTTCAAAACTGAGCTAACATTTACAGTAATACATGGTTTGGCAGTTTTCACTGGCTGCAGCCAAGGTAGTTATTAGAGAATCATAGAATGGCTTATCTTGAAAGGGAGCTCAAAGCCCATACTGCCCCAACCCCTGCCATGGGCAGGGCTGCCCCCCACCAGCTCAGGCTGCCCAGGGCCCCATCCAATCTGGCCTTGAGCGCCTCCAGGGATTGGGGCACCACAGCTTCTCTGGGCAGCTGTGCCAGCGCCTCACCACATTCTGGGGAAAGAATTTCCCCAACACTTAATCTAAATCTGTCTACTTTTAGTATAAAGCCATTTCCCCTTTACCTATCACTATCTACCAGTGTAAAAAATTGGTCTCCCTTCTGTTTGTAAGCTCCCCTTAAGCAGTGGAAGGCTACAGTGAGGTATCTCCAGAGCCCTCTCTTCTCCAGGTTGCACAAGCCCAGCTGCCTCAGCTTTTCTAAGTAGGAGAGCTGCTCCAGCCCTCTGATCATCTTTGTGGCCTCCTCTGGACCCATTCCAACAGCTCCACTCCTTCTTGTGCTGGGGATCCCATGCCTGGAGGCAGTACTCCAGATGGGGCCTCATAAGGGCAGAGCAGAGGGGAACAATCACCTCCCTCTCCCTGCTGGCCACCACTCTTCTGATGCAGGATACCATTGTTGACCTTCTAGGCTGCAAGCACACAAAGTTTCATGTATGCAGGCTGGGAATGGTGCTTCACAGAAGTTTAACCAGCAGTAAGTGTTACTTTGGGTCTGTCTGAAGCCCATTGAGGCTTCCCTCTCTAGAGATGTGAACACACCTTCAAACCCTCTCCCCCAGCATGCAGGCTGCTCCCTAATACAGGGTGTCCACATTGGTCCACAGGGTCATAGTTATCAAAGCAAGACGCTCCATTGGGCTGCCCTTAACACAGCTTTTCTCTCCAG
Seq C2 exon
TTCCAGGCCCTCCTGCTGGCGTTAAAGCAGCTGCATCTTCAGCCTCCACCGTCTTTGTGTCCTGGCTCCCTCCCCTCAAGCTCAACGGCATCATTCGGAAATACACCGTGTTCTGCTCACACCCCTACCCCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0004116=fn3=PD(46.6=77.4)
A:
NA
C2:
PF0004116=fn3=PU(50.0=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]