BtaINT0052837 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141965727-141967049:-
Coord C1 exon
chr1:141966753-141967049
Coord A exon
chr1:141966003-141966752
Coord C2 exon
chr1:141965727-141966002
Length
750 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
3' ss Seq
GCTTCTCTGTGTCTCTCCAGGGC
3' ss Score
11.69
Exon sequences
Seq C1 exon
ATGGAACTCCCAAAATCATTTCCGCCTTTAGTGAGAAAGTGGTGAGTCCGGCAGAGGCCGTCTCCCTGATGTGCAACGTGAAGGGAACGCCGCTGCCCACGATCACGTGGACCCTGGACGACGACCCCATCCTCAAGGGCGGCAGCCACCGCATCAGCCAGATGATCACGTCGGAGGGCAACGTGGTCAGCTACCTGAACATCTCCAGCTCTCAGGTCCGCGACGGGGGCGTCTATCGCTGCACGGCCAACAACTCTGCAGGCGTCGTCCTCTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GTGCTTGTCGAATCAACTCCTCAAAAAACACACATGACTCATTGTAGCGGAGAAGGACGTTTCTGCATGCACCGAGCCCAGTCTTGGAATGCCAGACCGGATTAATGTCGCTTCGTTGTCTCCTGCCCTCTTGCTTCCCACTGAGGAATGGCAGTGACTGGATCACTGTTGGAAATGGCATTTTGGTTTCCTTAGTCAGCTTGTTCTCTTGTTTTACTCTTAGACTTGTCCTCTGGAGCTTTCTTTTCCTGGTTTATGCTCTGCATGCTCTCTCCTTCCTCCTCTTCTTCTGTTCTACGACATTCATGGTAAACCTTCATGTACATGGTACTTAACCTACATTCATAGTGCAACATGGCATAACCTCCATCCTCACAATCTATTTTATAGAGAGAGAGTTAAACAGTTGAATTGATACCAGTGTCTCACCAGCTGAATATGATTGTTCAGTGCAGCTTGTTACTTTTTATTGATTAAATTGCCTTTTAGCCTATAATTCAAAATGTTTTAAATAGAAGTAGTTGGTAATTAGCACTCGTTCAATTCATTTGAAGGCAATGAAATGAAAAGGAAAAGAAAAAAAAAACCTTCTTAGTGGAAAATGCCAAATGCAGAAAAAAATTGCTGAATTGAAAAAGATGTCCTTACATGAAAACAAATACATTTTTAAACTCAAGGAAAAGTGTACTCATTTCCACACATAAAAGGTACCCTTAAATTATTTTCAAGAGCTTCTCTGTGTCTCTCCAG
Seq C2 exon
GGCCTGCAAGCATTCGACCAATGAAAAATATCACAGCAATAGCGGGACGCGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATCAAATGGTACAAGAACTCGAATCTGCTTCCTTTCAACCACCGCCAAGTGGCGTTTGAGAATAATGGAACCCTAAAACTCTCAGATGTGCAGAAGGAAGTTGATGAGGGGGAGTACACCTGCAACGTGCTAGTCCAGCCCCAGCTCTCCACCAGCCAGAGTGTCCACGTGACGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754:ENSBTAT00000006240:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGAAAGTGGTGAGTCCGG
R:
ACGGATAGCCAATCACACGAC
Band lengths:
354-1104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development