GgaINT0111548 @ galGal4
Intron Retention
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107764947-107766313:-
Coord C1 exon
chr1:107766017-107766313
Coord A exon
chr1:107765223-107766016
Coord C2 exon
chr1:107764947-107765222
Length
794 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
3' ss Seq
GTTCCTTTTTACTTTCCCAGGGC
3' ss Score
9.59
Exon sequences
Seq C1 exon
ATGGTACTCCCAAAATCATTTCTGCCTTCAGTGAGAAAGTGGTGAGTCCGGGCGAGCCAGTCTCCCTTATGTGCAATGTGAAGGGGACCCCCCTGCCTACCATCACTTGGACACTGGATGAAGATCCCATTGTGAAGGATGGCAGTCATCGCATCAGCCAGATTATCACCTCTGAAGGGAATGTGGTCAGTTACCTGAACATCTCTAACACTCAGGTCCGAGATGGTGGAGTTTATCGCTGTACTGCCAACAACTCTGCTGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GTGCTTGTCAAATCAGCTCCTCAAAAAAACACACATAACTCATTGTAGTGGAGAAGAAGATTGTTGCATGTCTTGAAAAGAGTCTTGGAATGCCAAAACCAACTTACTGTTTTCCCTCTCCTTTTCTTCCTCCCCTCTTTTTACCCACCCTGCCTTCCCAGACCCAGAAAGCGTATGATATGTTTAAACTTTGGAAGATTCCTCTTTGTGTTCTGTAGTCTCTTTTTCGTGTACTCATCATTACTAATACACATTTTCTTTACTTTAGTCCTGTTGTGCATGTTTTTTTCTTTTCATTTCCTCCTTTACTTGTCCACGGTAATTATTCATGTATACTGTACTTTACCTTGCATTTCTAGCTTTACATGGCATAATACCCATCCTCATGGTATTATACTTCATATATGTCAAAATAAATGCTAACTTTGTCGGTGTTCTCATGTGTAACAGGATTTTAGCTTTGTATCCATGTTAATATTTCACATTAATTAAATCATCCTCAGACTTTTAATTTGTAATGCAGCAAAGATTTTATCAGACAAGTGTTGGATAATGCAAACATATACCCCCACATAATTAGTATGTATGCTGCAGGGTGAGGAAAAACTAGAGCACACAAAGATTAGGGAAACTGTTTAAGTGGCTCTTAAAAGCAGAAACTGTCAAATACTAAGAAGTGTTGTGCAAGCTGCATCTGTAAATGTCATTAACATTGGTATATTCAGAAAATATATATATATATATTTCCTCAAACAAATGTACCTATATTCACAAGTTCCTTTTTACTTTCCCAG
Seq C2 exon
GGCCAGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACCTACATCCACTGCCGTGTAATAGGCTACCCATATTACTCCATCAAGTGGTACAAGAACTCTAACCTGCTACCCTTTAACCATCGTCAAGTGGCTTTTGAGAACAATGGGACATTGAAGCTTTCAGATGTGCAGAAGGAGGTAGATGAGGGTGAATACACATGTAATGTCCTCGTTCAGCCCCAGCTGTCCACCAGCCAGAGTGTTCATGTGACAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138:ENSGALT00000025993:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCGAGATGGTGGAGTTT
R:
CATGAACACTCTGGCTGGTGG
Band lengths:
348-1142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]