HsaINT0052343 @ hg38
Intron Retention
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40338101-40339415:-
Coord C1 exon
chr21:40339119-40339415
Coord A exon
chr21:40338377-40339118
Coord C2 exon
chr21:40338101-40338376
Length
742 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
3' ss Seq
GTTTCTTTGTGTCTCTCCAGGGC
3' ss Score
11.78
Exon sequences
Seq C1 exon
ATGGAACTCCCAAAATTATTTCTGCCTTTAGTGAAAAGGTGGTGAGTCCAGCAGAGCCGGTTTCCCTTATGTGCAACGTGAAGGGAACACCTTTGCCCACGATCACGTGGACCCTGGACGATGACCCGATTCTCAAGGGTGGCAGTCACCGCATCAGCCAGATGATCACGTCGGAGGGGAACGTGGTCAGCTACCTGAACATCTCCAGCTCCCAGGTCCGGGACGGGGGAGTCTACCGCTGCACTGCCAACAACTCGGCGGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq A exon
GTGCTTGTCAAATCAGCTCCTCAAAAAAACACACATAACTCATTATAGTGGAGAAGAAGATTTCTGCATGCACCGAGCTGGGTCTTGGAATGCCAGAGCGGATTAACTGTTGCTTCCCATTTCCTACCCTCTCCTTCCTACTCAGGAATGGCACTGACTGGGTTAATGTTGGAAATGGCATTTTGGTTTCTGTAGTCAGCTTGTTCTTTTTTACTCTAGATCTGTTCACCTGATGTTTCCTTTCCTGGTTTATGCTCTGCATGCCCTTTCCCTTCTCCTTCTCTTCGGTTCTTCCACATTCATGGTAAACCTTCATGTACATGGTATTAAACTTACATTCATGCTGCAACGTGATGTAACCTCCATTGTCGTCCTAGATTTTACAGAGAGAGTTAAACAATTGATCAATTGCTGCCAGTGTGTTCACCAAAAGTGCGTGATTGTCCAGTATAGACTAGTTACTTTCTATTAATTAAATTGCCTTTTATCTTGTAATTTTTAATTCAAAACATTTTCATAGAAGTAGCAGATAAAGTGTTTCACAGTTATACATTTGAATTTAAGAAAAGGAAAGAAAAACCTTTGTTGTAGAAAATGCCACATGCAAAAATATTTGTTTAACTGAAAAAGATGTGCTTACATGAATATAATCTACATTTTTAACTCAAGGAAAAGTGTACCCATTTCCCTACATGAGATGTACCCTTAAATTATTTTCAAGAGTTTCTTTGTGTCTCTCCAG
Seq C2 exon
GGCCTGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATTAAATGGTACAAGAACTCTAACCTGCTTCCTTTCAACCACCGCCAAGTGGCATTTGAGAACAATGGAACTCTTAAACTTTCAGATGTGCAAAAGGAAGTGGACGAGGGGGAGTACACGTGCAACGTGTTGGTTCAACCACAACTCTCCACCAGCCAGAGCGTCCACGTGACCGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587:ENST00000400454:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.0)
A:
NA
C2:
PF0767911=I-set=WD(100=98.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACCTTTGCCCACGATCA
R:
GGTGGTTGAAAGGAAGCAGGT
Band lengths:
351-1093
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development