HsaEX6006208 @ hg38
Exon Skipping
Gene
ENSG00000171587 | DSCAM
Description
DS cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr21:40338101-40347945:-
Coord C1 exon
chr21:40347670-40347945
Coord A exon
chr21:40339119-40339415
Coord C2 exon
chr21:40338101-40338376
Length
297 bp
Sequences
Splice sites
3' ss Seq
CATAATTTGTTTTCCTGCAGATG
3' ss Score
11.31
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
AGCCACTGAAAGCCACCATCAGTCCCAGGAAGGTTAAAAGCAGCGTGGGTAGCCAAGTTTCCTTGTCCTGCAGCGTGACAGGAACTGAGGACCAGGAACTCTCCTGGTACCGCAATGGTGAAATCCTCAACCCTGGAAAAAATGTGAGGATCACAGGGATCAACCACGAAAACCTTATAATGGATCACATGGTCAAAAGTGACGGGGGCGCATACCAGTGCTTTGTGCGCAAGGACAAGCTGTCCGCTCAAGACTATGTGCAGGTGGTCCTTGAAG
Seq A exon
ATGGAACTCCCAAAATTATTTCTGCCTTTAGTGAAAAGGTGGTGAGTCCAGCAGAGCCGGTTTCCCTTATGTGCAACGTGAAGGGAACACCTTTGCCCACGATCACGTGGACCCTGGACGATGACCCGATTCTCAAGGGTGGCAGTCACCGCATCAGCCAGATGATCACGTCGGAGGGGAACGTGGTCAGCTACCTGAACATCTCCAGCTCCCAGGTCCGGGACGGGGGAGTCTACCGCTGCACTGCCAACAACTCGGCGGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq C2 exon
GGCCTGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATTAAATGGTACAAGAACTCTAACCTGCTTCCTTTCAACCACCGCCAAGTGGCATTTGAGAACAATGGAACTCTTAAACTTTCAGATGTGCAAAAGGAAGTGGACGAGGGGGAGTACACGTGCAACGTGTTGGTTCAACCACAACTCTCCACCAGCCAGAGCGTCCACGTGACCGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171587-'21-31,'21-26,29-31=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.6)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCACTCCAGCCTGG
R:
CGTGTTAGCCAGGATGGTCTT
Band lengths:
225-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains