DreEX0028391 @ danRer10
Exon Skipping
Gene
ENSDARG00000028118 | dscamb
Description
Down syndrome cell adhesion molecule b [Source:ZFIN;Acc:ZDB-GENE-031118-67]
Coordinates
chr15:6238508-6250432:-
Coord C1 exon
chr15:6250157-6250432
Coord A exon
chr15:6246082-6246378
Coord C2 exon
chr15:6238508-6238780
Length
297 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTTGATTCCTCCAGATG
3' ss Score
10.31
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
AGCCTCTGAAAGCAGTGGTGAGCCCACGGAAGGTGAGGGGCAGCGTGGGTAGCCAAGTGTCTCTGTTCTGTAGTGTGACTGGCTCAGACGAGTTTGACATCACCTGGTACAGGAATGCGGAGAAGATCTATCAGGGTATAAATGTACGAATCACGGGCATTAACAACGAGAACCTGGTGATGGAGGGAATGGCCAAGAGCGATGGAGGAGCGTATCAGTGCTTTGCTCGAAATGGAAAGATGTCCACCCAAGACTTAGTTCAGGTCGTCTTGGAAG
Seq A exon
ATGGGACACCAAAGATCCTCTCTGCCTTCAGCGAGAAGGTTGTGAGCCCGAATGAGCCCATCTCGCTGGTGTGTCACGTGAAAGGAACCCCCCTCCCCACCGTCACCTGGACCCTGGACGACGACCCCGTCATCAAAGACAGCAACCACCGCATGGACCGCATCATCACCACAGAAGGCCACGTGCTCAGCTACCTGAATGTTTCTCACACGCAGGTCAGCGATGGGGGGGTCTACCGCTGCACCTGCAACAACTCGGCCGGATCGGTCTCCTATCAGGCTCGAATAAACGTAAGAG
Seq C2 exon
GTCCTGCCAGTATTCGACCAATGAAAAATGTCACTGCCATCGCTGGGAGGGACACGTACATACACTGTCGCATCATTGGTTACCCGTACTACTCTATTAAGTGGTATAAGGATTCCAATCTGCTCCCATTCAACCATCGCCAACGTGCCTTCGAGAACAACGGCACACTCAAGCTGTCCAATGTGCAAAACTCAGACGAGGGAGAGTATACATGCTACGTGTTGGTGGATCCAGAGAAACAAATTCACAGGAGTGTCCATGTGACAGTAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028118-'5-7,'5-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.030 C2=0.011
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.7)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=97.8),PF126033=DUF3770=PU(48.8=64.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATGGAGGGAATGGCCAAG
R:
CCCTCGTCTGAGTTTTGCACA
Band lengths:
302-599
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]