GgaEX6004375 @ galGal4
Exon Skipping
Gene
ENSGALG00000016138 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:107764947-107769038:-
Coord C1 exon
chr1:107768763-107769038
Coord A exon
chr1:107766017-107766313
Coord C2 exon
chr1:107764947-107765222
Length
297 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTCTCCCTTGGCAGATG
3' ss Score
12.5
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
AACCACTAAAAGCCACAATCAGCCCACGGAAAGTAAAAAGCAGTGTTGGTAGTCAAGTGTCCTTGTCCTGCAGTGTGACAGGAACAGAGGACCAAGAGCTCTCATGGTACCGTAATGGTGAAATCATTAACCCCGGTAACAATGTTCGGATCACTGGGATCAACCGGGAGAACCTTATCATGGATGGCATGGCTAAGAGTGATGGTGGAGCATACCAGTGCTTTGTGCGCAAGGACAAGATGTCCGCTCAAGACTATGTTCAAGTAATACTAGAAG
Seq A exon
ATGGTACTCCCAAAATCATTTCTGCCTTCAGTGAGAAAGTGGTGAGTCCGGGCGAGCCAGTCTCCCTTATGTGCAATGTGAAGGGGACCCCCCTGCCTACCATCACTTGGACACTGGATGAAGATCCCATTGTGAAGGATGGCAGTCATCGCATCAGCCAGATTATCACCTCTGAAGGGAATGTGGTCAGTTACCTGAACATCTCTAACACTCAGGTCCGAGATGGTGGAGTTTATCGCTGTACTGCCAACAACTCTGCTGGAGTCGTCCTGTACCAGGCTCGAATAAACGTAAGAG
Seq C2 exon
GGCCAGCAAGCATTCGACCAATGAAAAACATCACAGCAATAGCAGGACGGGACACCTACATCCACTGCCGTGTAATAGGCTACCCATATTACTCCATCAAGTGGTACAAGAACTCTAACCTGCTACCCTTTAACCATCGTCAAGTGGCTTTTGAGAACAATGGGACATTGAAGCTTTCAGATGTGCAGAAGGAGGTAGATGAGGGTGAATACACATGTAATGTCCTCGTTCAGCCCCAGCTGTCCACCAGCCAGAGTGTTCATGTGACAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016138-'9-11,'9-10,12-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.010 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=95.7)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTGTGACAGGAACAGAGG
R:
TGGGTAGCCTATTACACGGCA
Band lengths:
293-590
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]