MmuEX6063641 @ mm10
Exon Skipping
Gene
ENSMUSG00000050272 | Dscam
Description
Down syndrome cell adhesion molecule [Source:MGI Symbol;Acc:MGI:1196281]
Coordinates
chr16:96819724-96825773:-
Coord C1 exon
chr16:96825498-96825773
Coord A exon
chr16:96820750-96821039
Coord C2 exon
chr16:96819724-96819999
Length
290 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTGTCTCCCTGCAGACG
3' ss Score
13.04
5' ss Seq
AACGTAAGA
5' ss Score
7.69
Exon sequences
Seq C1 exon
AGCCACTGAAAGCCACCATCAGTCCCAGAAAGGTTAAAAGCAGCGTGGGCAGCCAGGTCTCCTTATCCTGCAGTGTGACAGGAAATGAAGACCAGGAACTCTCCTGGTACCGAAATGGCGAAATCCTCAACCCTGGAAAAAACGTGAGGATCACAGGACTCAACCACGCAAACCTTATAATGGATCACATGGTCAAGAGTGATGGGGGTGCCTACCAGTGCTTTGTGCGCAAGGACAAGCTATCTGCTCAAGACTATGTCCAGGTGGTCCTTGAAG
Seq A exon
ACGGAACTCCCAAAATCATTTCTGCCTTTAGCGAGAAAGTGGTGAGCCCGGCAGAGCCAGTGTCCCTCGTGTGCAATGTGAAGGGTACACCCTTGCCCACGGTCACCTGGACCCTGGACGATGACCCCATCCTCAAGGGCAGCGGTCACCGCATCAGCCAAATGATCACGTCCGAGGGGAACGTGGTCAGCTACCTGAATATCTCCAGCTCCCAGGTCCGGGATGGGGGTGTCTACCGCTGCACTGCCAACAACTCGGCTGGAGTCGTCCTGTACCAGGCTCGAATAAAC
Seq C2 exon
GGCCTGCAAGCATCAGACCAATGAAAAACATCACTGCGATAGCGGGGCGTGACACGTACATCCACTGCCGCGTAATTGGCTATCCGTATTACTCCATCAAGTGGTACAAGAACGCTAACCTGCTTCCTTTCAACCACCGCCAGGTGGCGTTTGAGAACAATGGGACTCTGAAACTCTCTGATGTGCAGAAAGAAGTTGACGAGGGAGAGTACACGTGTAATGTGCTGGTACAGCCACAGCTCTCCACCAGCCAGAGTGTCCACGTGACAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000050272-'13-12,'13-11,14-12
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.6)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTCAAGAGTGATGGGGGT
R:
CACGTGTACTCTCCCTCGTCA
Band lengths:
305-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types