BtaEX6003655 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004754 | DSCAM
Description
Down syndrome cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:3039]
Coordinates
chr1:141965727-141976674:-
Coord C1 exon
chr1:141976399-141976674
Coord A exon
chr1:141966753-141967049
Coord C2 exon
chr1:141965727-141966002
Length
297 bp
Sequences
Splice sites
3' ss Seq
CGTGATTTGTCTTCCTGCAGATG
3' ss Score
11.31
5' ss Seq
GAGGTGCTT
5' ss Score
3.62
Exon sequences
Seq C1 exon
AGCCACTGAAAGCTACCATCAGCCCCAGGAAAGTTAAAAGCAGCGTGGGCAGCCAGGTTTCCTTGTCCTGCAGCGTGACTGGAAGTGAGGACCAGGAACTCTCCTGGTACCGAAATGGTGAAATACTCAACCCTGGAAAAAATGTGAGGATCACAGGGATCAACCACGAAAACCTTATAATGGATCACATGGTCCGAAGTGACGGCGGAGCCTACCAGTGCTTTGTGCGCAAGGACAGGCTGTCCGCTCAAGACTTTGTGCAGGTGGTCCTTGAAG
Seq A exon
ATGGAACTCCCAAAATCATTTCCGCCTTTAGTGAGAAAGTGGTGAGTCCGGCAGAGGCCGTCTCCCTGATGTGCAACGTGAAGGGAACGCCGCTGCCCACGATCACGTGGACCCTGGACGACGACCCCATCCTCAAGGGCGGCAGCCACCGCATCAGCCAGATGATCACGTCGGAGGGCAACGTGGTCAGCTACCTGAACATCTCCAGCTCTCAGGTCCGCGACGGGGGCGTCTATCGCTGCACGGCCAACAACTCTGCAGGCGTCGTCCTCTACCAGGCTCGAATAAACGTAAGAG
Seq C2 exon
GGCCTGCAAGCATTCGACCAATGAAAAATATCACAGCAATAGCGGGACGCGACACATACATTCACTGTCGTGTGATTGGCTATCCGTATTACTCCATCAAATGGTACAAGAACTCGAATCTGCTTCCTTTCAACCACCGCCAAGTGGCGTTTGAGAATAATGGAACCCTAAAACTCTCAGATGTGCAGAAGGAAGTTGATGAGGGGGAGTACACCTGCAACGTGCTAGTCCAGCCCCAGCTCTCCACCAGCCAGAGTGTCCACGTGACGGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004754-'2-4,'2-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=WD(100=94.6)
A:
PF0767911=I-set=WD(100=95.0)
C2:
PF0767911=I-set=WD(100=98.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGCTACCATCAGCCCCAG
R:
CATTGGTCGAATGCTTGCAGG
Band lengths:
292-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]