BtaINT0052855 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28535411-28536396:-
Coord C1 exon
chr15:28536298-28536396
Coord A exon
chr15:28535600-28536297
Coord C2 exon
chr15:28535411-28535599
Length
698 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
CAGGCAAACCTCCCGGCCAGGCT
3' ss Score
0.96
Exon sequences
Seq C1 exon
TTCCCCCGGACCAGCCCCGTCTGACTGTCTCCAAAACCTCGGCTTCATCCATCACTCTGACCTGGATTCCGGGTGACAATGGGGGCAGCTCCATCCGAG
Seq A exon
GTGAGGGGGCCTGGATGAGGAGTGCGGAGAATTCTGGGCCGGGGCAGAGGAAGCGCTTCACTTACTCCCACTGCTTGTCCTCATAAGGCTTTGGAAGTGATGGGAAGAGGGGTGGTTTGGACCACAGGGGAGTTACCCAAGCGCCATGGAAAATATACCAGCCTAGACGTCTGAGCTTTAGAACACCCACCCCCGCATTGCCAGTGGTGAGCTGTGTGAACCTGAGGAAGTCTGTTTTCTTCTCTGGGTCTTAGTTTCCAAATCTATAAAATCAACAAATGTTCTAGATACTTGAACTTAAATATGCATATGAATCACCAGGGGATCTTGTAAGAACACAGATTCTGATTCGGGGAGCTGAGAATCTGCATGTCTAACAAGCTCCCAAGTGATGCTTTGGGGCCAGGGGACTGTACACGGAGTAGCAAGGTCTCAATAGGACCCCTTTGAAGTCTCACAGCTCCGGTTTCTGCTCCCCTCCCCACCCTGGCTTCTAAACCCTAACACAAGAGCCGATGGGAGAGAGTCCTACAACTCACCCCAGATCCTTCCAGTTTTGCATCTAATTGGCGTCCACGCCATCCTAACGGCCAAAAGTTCCCCCTGCTGACCCCCTGCGGAGCCCAGTCCCATGACAGCTGTTGGGGGACCCCAGGCCCCGCCCTGCCCCTCCTGAGCCAGGCAAACCTCCCGGCCAG
Seq C2 exon
GCTTCGTGCTGCAGTACTCGGTGGACAACAGTGAGGAGTGGAAGGATGTGTTCGTCAGCTCGAGCGAGCGGTCCTTCAGGCTGGACAGCCTCAAGTGCGGCACGTGGTACAAGGTGAAGCTGGCGGCCAAGAACAGCGTAGGCTCCGGGCGCATCAGTGAGATCATTGAGGCCAAGACCCACGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(36.9=91.2)
A:
NA
C2:
PF0004116=fn3=PD(61.9=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCGTCTGACTGTCTC
R:
GTGGGTCTTGGCCTCAATGAT
Band lengths:
270-968
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development