MmuINT1009109 @ mm10
Intron Retention
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45742990-45744320:+
Coord C1 exon
chr9:45742990-45743088
Coord A exon
chr9:45743089-45744131
Coord C2 exon
chr9:45744132-45744320
Length
1043 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CGCGCCAACCCCTCCTGCAGGCT
3' ss Score
7.64
Exon sequences
Seq C1 exon
TTCCCCCGGACCAGCCCCGCCTCACTGTCTCCAAAACCTCTGCCTCTTCTATCACCCTGACCTGGATTCCAGGAGACAATGGGGGCAGCTCCATCAGAG
Seq A exon
GTAAGGAGGGGAGGGAACTACTCACCTGTTTCTAATACTTGGTCCCATAATCCCCGAGAATCTGGAGGGTAATTCAGACTGTGAGGCATACATGGAGAGCGCTCCCACCCCCTCCATTTGTGAGCAGAACAGATCTTTCCTCTCTGGACCTTGGTTTCCCAGTCTTTCAAAGCAGGCAAACATGACATCAGCACCTCTCAAACAAGGGTCTGTGTGGCTCGGCAAAGATTGTTATAAGAATGCAGCTCAAGGCCAGGCATGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAGAAAAAAGAAGAAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGCATGGTGGTGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAGAAAAAAGAAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGCAGCTCAGCGTTCGTTCAGTAGTCTGCTGCAGTGGGGCTAAAAGTGTACTTCCAAATTGCTCTTCTCAAATGGGGACACTTCTGGTCAGGGACTCCCTGTCCCCTCCTAGAACAGTTAGTGTCATAAGCCTACCAGCTCTCTTAACCTAATGCTAGATCTATGGAGAGACCCAGACTCTCCCAGCGCTACAATGGCAGGCCTCCCCGCTTTGAATCTCATTTGCATATGCCCATCCCTATGGCCTCTGCTAGAGTCGAGGCTGGGTCTCTCCTGCCCTGTCCTTCTCTGCTTTGCCCCACTCGCGCCAACCCCTCCTGCAG
Seq C2 exon
GCTTCGTGTTGCAATACTCTGTGGACAACAGCGAGGAGTGGAAGGATGTGTTCATCAGCTCTAGCGAGCGCTCCTTCAAGCTAGACAGCCTCAAGTGTGGCACGTGGTACAAGGTGAAGCTGGCGGCCAAGAACAGTGTGGGCTCTGGGCGCATCAGCGAGATCATCGAGGCCAAGACCCATGGGCGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087:ENSMUST00000034592:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(36.9=91.2)
A:
NA
C2:
PF0004116=fn3=PD(61.9=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCCCGCCTCACTGTC
R:
ATGGGTCTTGGCCTCGATGAT
Band lengths:
270-1313
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types