GgaINT0138378 @ galGal3
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
NA
Coordinates
chr24:5437094-5438730:-
Coord C1 exon
chr24:5438632-5438730
Coord A exon
chr24:5437283-5438631
Coord C2 exon
chr24:5437094-5437282
Length
1349 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
CCTCCAACTTCAACCCTCAGGCT
3' ss Score
7.22
Exon sequences
Seq C1 exon
TGCCCCCAGACCAGCCCCGCCTGACCGTGTCCAAGACCTCAGCCTCCTCCATCACGCTGGCATGGATTCCTGGGGACAATGGGGGCAGCTCCATCCGAG
Seq A exon
GTACGTCCCCAGAGCCACCCCACGTGCTCCAAAATAAGGTTAATGCTTGCAGGAGGGGTGCCACTCTTCGTGAGTGCCTTTTTCAGCAGGATGCAGGGAGTGAGGCAGCTAACAAAGGGCACGCCGTTAATTACGCAGGTGCTGGTGGCTCCAGTGCTGGAGCTCTGCCGGGCTCATCCCCGGTGTCTGTGGGCTGCAGGAGGGCTGTGGGACCACCCCTGCCTCCCAGAGCCTCCTTTCTGCTCTGATTCATCTGATGAATTATACGTGGAAACAGCTGCGCATGGAGGGGGGAGCGGGGAGAGGGGAAGGAGACCTCGCTTACAATTAATTAAAAGCATGAAAGTAATTACAAGCAAATCTCCCCAGCCAGCAGCCTTTCACTCCAGTGGACTCTGTTGATAAATTTGGTTATAATTGGATTAGAAATATTAAAAACATGCTGCATGTACTAAATAAATGAATGCCGGGTGGCAGGCAGCGGGGTGCTGGGTGGGCACTGGGATGGGGATGGGGCAGCTCAGGTGCCCCGTGCTCTCATCGCGGGGTGAAGGAGGCAGCAGTGCGGGGAGCAGTGCTCTGTTTGGCTCCTGATGCACACGCAGCGGCAGAACAGCCGCTATCTTTGCTTGAGAATTGGCAAAGGGAAACATGAAAATAGCCAAATCTGGCGTTGTGATGGGGAAGTAAGTGGGGATTTTGCATCGCCAAAAAGGTCAGAACAGTCAGAGTGGTGGTTCCCACAGAAACAGGGCCGTTGTGCACACACTGCAGGGCAGCCGTGCTCCATCCCCGTGACCGGGAGGTGCCAGGCATGGGCAGAGCAGCGGTGGGTGCGGGCAGCCCCGTGGTGATGGGCTCCATGAACAGCCCCATGCTGGTATGGGGCACACACTCAGCATGGGGTGAGCAGCTCTGTGCTGCTCCAGGCATCGCAGCACCGTGTCCTGTGCCCTGCTGTGGGGAAACCCAGAGTGCCCTTCTCCGACATCTGGCTGCCGGCAGCGTAACAGGTTTGCTCATCCAGGACACAGTGCGCTTCCTAATACTCTTAATCATGGGAAAGGAGGCGGCGTTCAATGACAGAAGCAACTTCCGAGCAGCTTCCCGAGGGAGCTAGTTAATTCTGGCTTTCCCTTTATAGCCTCACACCAATCAATCACGTTCCGCGCTCCCTGCGCTCCTGTGCACAACCGCAGTAATTGGTGGTGGAGGCGGGCGCAGAGCACGGAGCTGCTCAGCACGGGCTGAGGGCTGCATGCAGCCGGCCCGTGCTGCAATGGGGATGGCACTCCCGGGGGGCTCTGTGCTGGCCGTGCCCGCAGACCCCCTCCAACTTCAACCCTCAG
Seq C2 exon
GCTTCGTGCTGCAGTACTCAGTGGACAACAGCGAGGAGTGGAAGGATGTCTTCATCAGCTCTTCCGAGCGCTCCTTCAAGCTGGAGAGCCTCAAGTGCGGCACCTGGTACAAGGTGAAGCTGGCAGCCAAGAACAGCGTGGGGGCCGGGCGCATCAGTGAGATCATCGAGGCCAAAACCCACGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000025989:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(36.9=91.2)
A:
NA
C2:
PF0004116=fn3=PD(61.9=81.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGACCGTGTCCAAGAC
R:
CTCTGCCGTGGGTTTTGG
Band lengths:
270-1619
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]