BtaINT0053600 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008449 | DYNC2H1
Description
dynein, cytoplasmic 2, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2962]
Coordinates
chr16:29054255-29054834:+
Coord C1 exon
chr16:29054255-29054386
Coord A exon
chr16:29054387-29054738
Coord C2 exon
chr16:29054739-29054834
Length
352 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TTTGTGACATTCTGTTTAAGCTG
3' ss Score
6.69
Exon sequences
Seq C1 exon
GCTTTCATAAAACTGAAGAAGATTTTAGTCTTACCTGATTTCAACCCAAACAAGATTGCTCTCGTTTCTGTTGCTTGTTGCTCTATGTGCCAGTGGGTTATAGCCTTGAATAACTACCATGAAGCACAGAAG
Seq A exon
GTATGCTTTTCCCTCTTAAACACCTGTAACAATTTGCAAGTGATAACGTCATTGTCCCAGAAAAGCATTTAATGCTCAAATGAACTTCTGTGGAAAGAATGCTTAATGAAAAACACTTTTACAACCATATTATGTTAACTCTTAGACATCAAATTCTCGTGTCATGTTCTTGAATTTATGACAACTATGCTATTGTTTTATTTGTTTTAATGTTTCTCCATATTAAGTAATTTCCCTTTGTACACTAATTCTAAGAAAGCTTAAGAGTTGACGTATGTAAGTGTCTTTTAATCTTAAGTGGTATTTTTAACAGTGAACTTAAGCACTTAAATTTTGTGACATTCTGTTTAAG
Seq C2 exon
CTGGTGGGCCCTAAACAAATCCAAGTGGCTGAAGCTCAAAATGTCCTAAAAATAGCACAACAAAGGTTGGATGAGAAACAAAGAGGTTTACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008449:ENSBTAT00000011123:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100)
A:
NA
C2:
PF127772=MT=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTAGTCTTACCTGATTTCAACCCA
R:
CAGCTGTAAACCTCTTTGTTTCTCA
Band lengths:
206-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development