HsaINT0049487 @ hg19
Intron Retention
Gene
ENSG00000185842 | DNAH14
Description
dynein, axonemal, heavy chain 14 [Source:HGNC Symbol;Acc:2945]
Coordinates
chr1:225511924-225512534:+
Coord C1 exon
chr1:225511924-225512055
Coord A exon
chr1:225512056-225512438
Coord C2 exon
chr1:225512439-225512534
Length
383 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
GTTCTGACATTCTCTTTAAGGTT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTTTTCGTGAAGCTAAAAAAAATTGTAACCTTACCTGATTTCAACCCACACAAGATTTCGCTGGTTTCTGTTGCTTGTTGCTCCCTGTGCCAGTGGGTTATAGCTTTGAATAACTACCATGAAGTACAGAAG
Seq A exon
GTATGCTTTTCCTCCTAAACATCTGTCATGATTTGGAAGTGGCACATCAATGTCCCAGAAATAATTTTTATTTACCAATACTCAAATGAACTTGAGTGGAAAGGATACCTAAGGAGAAACACTTTAATCAAATGTTATTCTAACTCACACAGATGTCAAGTGCTCCCATTAAATTTGTTATTTATTGACAACTATGCTAGTATTTGTGTATTTCATTTTATTGTTTCACCATAATAGGCAACTTTGTACCCCACATATACATATAGTTCTAGGAAAGTTTAATTGTAACAATTGACTCTGTAAATGTCTTTCAAATATAAATGGCATTTTTAACAGTAAACCCGACGTTTTTGACACTTAAATGTTCTGACATTCTCTTTAAG
Seq C2 exon
GTTGTGGGCCCTAAACAAATCCAAGTAGCTGAAGCTCAAAACGTCCTTAAAATTGCGCGACAAAGACTTGCTGAGAAACAAAGAGGTTTACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842-DNAH14:NM_001373:61
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(14.8=100)
A:
NA
C2:
PF127772=MT=FE(12.9=100),PF127812=AAA_9=PU(1.2=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAACCTTACCTGATTTCAACCCA
R:
CAGCTGTAAACCTCTTTGTTTCTCA
Band lengths:
206-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)