MmuINT1008789 @ mm10
Intron Retention
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181752021-181752611:+
Coord C1 exon
chr1:181752021-181752152
Coord A exon
chr1:181752153-181752515
Coord C2 exon
chr1:181752516-181752611
Length
363 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
GGTGTTTTACTCTTGTGAAGGTG
3' ss Score
5.72
Exon sequences
Seq C1 exon
GTGTTCTTGAGGCTCAAGAAGATTTTAAATCTGCCTGACTTCAACCCCAACAAGATTGCGATGGTTTCTGTGGCTTGTTGCTCCATGTGCCAGTGGGTGATTGCCTTGAATAACTACCATGAAGTACAGAAG
Seq A exon
GTACGCCTTGCGTCCTGATTCTCCATCATGATGTACACGGGACCCGGCATAGTCCTGAAAGTAACTGGTACTTAGCAGTGCTCAAGTGAACCTCCACTGCCTGCTGAAACCCATATGTCTTTCCGGTCTCATGCTCATTCGCCTAGACTCAATGCTTCTTTTAAATGTGTCCTATGAAAACTGTGGTGCACTTCTATTTGTTTTATTTAGTATTTAGTCCACAATACACTGCATCCCTTCAGTGCATATATAAAATTCCAGGAAAGTTTGTTTTAAAGACTGATACCTGTGTCTCCCAAGTATCAGACATTTTAAACCACAAGCCTAACTGTTTGACCCCTTGGGTGTTTTACTCTTGTGAAG
Seq C2 exon
GTGGTGCGTCCTAAGCAGGCACAAGTGGCAGAGGCTCAGAACGTCCTTCAGATTGCAAAGCAGAGGTTGTTGGAAAAGCAAAGAGGTTTACAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369:ENSMUST00000160345:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(12.8=100)
A:
NA
C2:
PF127772=MT=FE(9.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGGCTCAAGAAGATTTTAAATCT
R:
CAGTTGTAAACCTCTTTGCTTTTCCA
Band lengths:
222-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types