HsaINT0049487 @ hg38
Intron Retention
Gene
ENSG00000185842 | DNAH14
Description
dynein axonemal heavy chain 14 [Source:HGNC Symbol;Acc:HGNC:2945]
Coordinates
chr1:225324222-225324832:+
Coord C1 exon
chr1:225324222-225324353
Coord A exon
chr1:225324354-225324736
Coord C2 exon
chr1:225324737-225324832
Length
383 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
GTTCTGACATTCTCTTTAAGGTT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTTTTCGTGAAGCTAAAAAAAATTGTAACCTTACCTGATTTCAACCCACACAAGATTTCGCTGGTTTCTGTTGCTTGTTGCTCCCTGTGCCAGTGGGTTATAGCTTTGAATAACTACCATGAAGTACAGAAG
Seq A exon
GTATGCTTTTCCTCCTAAACATCTGTCATGATTTGGAAGTGGCACATCAATGTCCCAGAAATAATTTTTATTTACCAATACTCAAATGAACTTGAGTGGAAAGGATACCTAAGGAGAAACACTTTAATCAAATGTTATTCTAACTCACACAGATGTCAAGTGCTCCCATTAAATTTGTTATTTATTGACAACTATGCTAGTATTTGTGTATTTCATTTTATTGTTTCACCATAATAGGCAACTTTGTACCCCACATATACATATAGTTCTAGGAAAGTTTAATTGTAACAATTGACTCTGTAAATGTCTTTCAAATATAAATGGCATTTTTAACAGTAAACCCGACGTTTTTGACACTTAAATGTTCTGACATTCTCTTTAAG
Seq C2 exon
GTTGTGGGCCCTAAACAAATCCAAGTAGCTGAAGCTCAAAACGTCCTTAAAATTGCGCGACAAAGACTTGCTGAGAAACAAAGAGGTTTACAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185842:ENST00000327794:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127772=MT=FE(14.8=100)
A:
NA
C2:
PF127772=MT=FE(12.9=100),PF127812=AAA_9=PU(1.2=3.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTAACCTTACCTGATTTCAACCCA
R:
CAGCTGTAAACCTCTTTGTTTCTCA
Band lengths:
206-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development