BtaINT0054758 @ bosTau6
Intron Retention
Gene
ENSBTAG00000030278 | EGFL7
Description
Bos taurus EGF-like-domain, multiple 7 (EGFL7), mRNA. [Source:RefSeq mRNA;Acc:NM_001078038]
Coordinates
chr11:104130864-104131233:+
Coord C1 exon
chr11:104130864-104130933
Coord A exon
chr11:104130934-104131066
Coord C2 exon
chr11:104131067-104131233
Length
133 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACACCCCCTTTCCTGCAGATG
3' ss Score
10.51
Exon sequences
Seq C1 exon
NNAGGGAGCTGTGTCCTGCCTGGCCGCTGTCACTGCCCTGCAGGATGGCAGGGCAACGCCTGCCAGACAG
Seq A exon
GTGAGGCTGGCACCCGGCCATCCAGAGGAGGAGGGAGCCCCCGGGCACCTCCCACGGATCCTGGCAGCCCCGAGGGGTGGGTCTTGAGGGGGCTCAGGGAGGGTGCTCGTGCCTGACACCCCCTTTCCTGCAG
Seq C2 exon
ATGTGGACGAGTGCAGCGCCGGAGAGGGCGGCTGTCCCCAGCGCTGTGTCAACACGGCGGGCAGTTACTGGTGCCAGTGTTGGGAGGGGCACCGCCCATCTGTGGACAGGGCAGTCTGCCTGCCTGAGAGAGGAGCCCCCAGGGTGACCCCAGACCCCACGACAGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000030278:ENSBTAT00000042753:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=87.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=71.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGCTGTGTCCTGCCT
R:
ACCTGTCGTGGGGTCTGG
Band lengths:
234-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development