GgaINT0123949 @ galGal3
Intron Retention
Gene
ENSGALG00000002420 | EGFL7
Description
NA
Coordinates
chr17:8432096-8433423:-
Coord C1 exon
chr17:8433328-8433423
Coord A exon
chr17:8432261-8433327
Coord C2 exon
chr17:8432096-8432260
Length
1067 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
AGCCATCCCTGTGCTTTCAGATG
3' ss Score
8.04
Exon sequences
Seq C1 exon
CTCTGTGCCAGGTGCCGTGCCAGAATGGTGGCCGCTGCTCCTTCCCTGGAAGATGTGCCTGCCCTCCCGGCTGGATGGGGCCTTCCTGCCAGACAG
Seq A exon
GTACTGCTGCACCCTGCTTCCCTCCTGGCATGGGGGACTATGCAAGGTCAGCATGAGCTGGGGCTGTGCTCTGCTGTGACTGCAGTCAGCAAAGGGCCTTCAGCAGAGCAGCCCTCACACACACGGGGCAGCCCCAAGACTGCGTATTTACAGTGATCCAACTCTTGCTGTAAACGAAGACACTCATTTGCTGCAGAGCCTAAATCTGTAAAGCAAAAAGATCCGGGGGTGGAGGGAAAGGGCTCCTCTCCTGCACAACAGCAGTCTGATGCCTCACTGGAGCACAGGGATATCCAGCAGAGCACACCAGCATGGTGCAAACCACTTCCACTACTACTTCTCCTGCCTGTCCACCCTCCTGTAAGGCAGAGGAGGAGTGCGTGGCACTGACCCATGCTTGGCAGGGCAGGGCTGAGAGTATCGCTGACAGCTCCGGCTCCAGCGCTGGGGAAAGGATTTTCCCACTGCCTAGAACAGATTTGCCCAGGCGTGGGAAGCAGCTCTGCTCATTTTGCTTTGTGGGAACAGCTTTAATAACTCCCCCGTGTGAGGAGAGGTTACTGGGTTTTATACACACTTGAAAGGCTGATAGCTCCTCACCACGGCTGGCTGGAACCAAAACCCCAGCCATAAATCCAGGATGAGAGCCAGGCACTGAGAGCAGCGGCACGGAGCCGCCTGCACCACTCTGCTCAAGGATGGTGCCTTCTCTGGCCAAAGCGTGGGCATTTCTGGGTTTATCTTTTGCTTTTTACCCTTAGGAGAGTGAAAGGGATGTAGGAAGGCCAGATTCTCCCTCTGGATAAATAAGTAATATGGGTATCCTATACTTACACTAGCATCTTCCTAGTGTGCTCCTACCCTGTCTGAGGGGCACCCACACAGGTGCCAGCCAAGTTTGGGGAGGGTGACCTGGGCCTCAGCCATATTCCCATCACATCCCCAGCCTGGGGATGTCAGTATGGCTCTGGCAGGGGGAAGCAGCACCTCCGCTCCATCCACACCTCTCTGGCCCTGAGCATTTTACTCCCAGCCCTGTCCTCATGGAGCCATCCCTGTGCTTTCAG
Seq C2 exon
ATGCGGATGAGTGTGCAGGCCGGAGCCACGGGTGCAGTCAGCTCTGCATCAATACAGCTGGGAGCTTCCACTGTGCCTGCCGGGATGGCTTTAGCCTCGCTGCTGATAACAAGGCATGCCAGCCCGTGGTGCCAGGCCCCAAGCCAGGAACCTTCAGCCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002420:ENSGALT00000003809:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF079748=EGF_2=PD(87.9=87.9)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGTGCCGTGCCAGAAT
R:
CTGCTTGGCTGAAGGTTCCTG
Band lengths:
254-1321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]