HsaINT0054579 @ hg19
Intron Retention
Gene
ENSG00000172889 | EGFL7
Description
EGF-like-domain, multiple 7 [Source:HGNC Symbol;Acc:20594]
Coordinates
chr9:139564366-139564782:+
Coord C1 exon
chr9:139564366-139564461
Coord A exon
chr9:139564462-139564620
Coord C2 exon
chr9:139564621-139564782
Length
159 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACACCCCGTTTCCTGCAGATG
3' ss Score
9.98
Exon sequences
Seq C1 exon
CAATATGCCAGCCGCCATGCCGGAACGGAGGGAGCTGTGTCCAGCCTGGCCGCTGCCGCTGCCCTGCAGGATGGCGGGGTGACACTTGCCAGTCAG
Seq A exon
GTGAGGCTGGCTCTACCCTGGGGGGCCCTGGAAGGGTCCTGGGCACCTCCTTGCATGTCCTGGGGTTACTGCTGGCCCATGAGTGGGTGGTTGTGAAGGGAGCTGTGTGGGCAGGACCCCTCCCGCAGGCATGGCCGCCTGACACCCCGTTTCCTGCAG
Seq C2 exon
ATGTGGATGAATGCAGTGCTAGGAGGGGCGGCTGTCCCCAGCGCTGCGTCAACACCGCCGGCAGTTACTGGTGCCAGTGTTGGGAGGGGCACAGCCTGTCTGCAGACGGTACACTCTGTGTGCCCAAGGGAGGGCCCCCCAGGGTGGCCCCCAACCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889-EGFL7:NM_201446:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.207
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATGCCAGCCGCCATGC
R:
CTCCCTTGGGCACACAGAGT
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)