HsaINT0054579 @ hg38
Intron Retention
Gene
ENSG00000172889 | EGFL7
Description
EGF like domain multiple 7 [Source:HGNC Symbol;Acc:HGNC:20594]
Coordinates
chr9:136669914-136670330:+
Coord C1 exon
chr9:136669914-136670009
Coord A exon
chr9:136670010-136670168
Coord C2 exon
chr9:136670169-136670330
Length
159 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGACACCCCGTTTCCTGCAGATG
3' ss Score
9.98
Exon sequences
Seq C1 exon
CAATATGCCAGCCGCCATGCCGGAACGGAGGGAGCTGTGTCCAGCCTGGCCGCTGCCGCTGCCCTGCAGGATGGCGGGGTGACACTTGCCAGTCAG
Seq A exon
GTGAGGCTGGCTCTACCCTGGGGGGCCCTGGAAGGGTCCTGGGCACCTCCTTGCATGTCCTGGGGTTACTGCTGGCCCATGAGTGGGTGGTTGTGAAGGGAGCTGTGTGGGCAGGACCCCTCCCGCAGGCATGGCCGCCTGACACCCCGTTTCCTGCAG
Seq C2 exon
ATGTGGATGAATGCAGTGCTAGGAGGGGCGGCTGTCCCCAGCGCTGCGTCAACACCGCCGGCAGTTACTGGTGCCAGTGTTGGGAGGGGCACAGCCTGTCTGCAGACGGTACACTCTGTGTGCCCAAGGGAGGGCCCCCCAGGGTGGCCCCCAACCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172889:ENST00000371699:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=84.8),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=72.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATATGCCAGCCGCCATGC
R:
CTCCCTTGGGCACACAGAGT
Band lengths:
227-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development