BtaINT0054904 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012148 | EHMT1
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 1 (EHMT1), mRNA. [Source:RefSeq mRNA;Acc:NM_001099041]
Coordinates
chr11:105435647-105436475:-
Coord C1 exon
chr11:105436398-105436475
Coord A exon
chr11:105435763-105436397
Coord C2 exon
chr11:105435647-105435762
Length
635 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
ACTTCTCGTGTCTGCCCCAGGAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGTGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
Seq A exon
GTGAGTCCGCGGGCTGGGGACGGGGGTTCAGATGGTGCCGACCGGAAGCCAGGGCCTAGGGCAGGGTGGAGCCTGTGTCCTGGCGGGGCAGGGGGTGGCGCGGCTGGGGCCAGGGCGGCATCCCCAGCCTGGCTGGAGGCAGCTGTGGGGCTGGGAGGGCGCTGCTGAGGCAGGAACCCCCCGACTTTGGTTTGGGGGCAGGAGTGGGGTGTCCTGGGTGGGGAGGGCACATAGGCCCCACATGGAGGCTGCTGGCACAGGGTCGTCATTAGGGAAGACCTCTCAGAATGGTCTCTGAAGTTGCCAGGGCCCCAGACTCTGCCTGGTGTAGCCCAGCAGCTCATGGCATGCTGGCTCCCTCCAGAATGGGGATTTGCAGAGGGGCAGGAGGTGTGGGCTGGCGGTCCTGGCAGGAGGCCACAGGGCAGGCTGCACGGGCCTCGGGAGGCTGAGAGGGTGCCGGGAAGGTGGGCAGGGGGGCCAGGCAGGGACCAGGAGAACCAGCCACGTGGACTCCTGGCCAGAGGCTTCCCCTGGCCTTCCCTGTCCTCCCGGGCGGAAGCCAGTGTTCTGGGGGCGTGCTCGTCTGTGGAGGCCTTGCTGTGGGTGGCGACTACTTCTCGTGTCTGCCCCAG
Seq C2 exon
GACGGTCGGCTGCTGCCAGAGTTCAACATGGCAGAGCCGCCCCTGCTGTTCGAGTGCAACCACGCCTGCTCCTGCTGGAGGACGTGCCGCAACCGCGTGGTGCAGAATGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012148:ENSBTAT00000016118:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTGCATCGACGACTG
R:
CTGAGGCCATTCTGCACCAC
Band lengths:
190-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development