MmuINT0055980 @ mm10
Intron Retention
Gene
ENSMUSG00000036893 | Ehmt1
Description
euchromatic histone methyltransferase 1 [Source:MGI Symbol;Acc:MGI:1924933]
Coordinates
chr2:24803014-24804020:-
Coord C1 exon
chr2:24803943-24804020
Coord A exon
chr2:24803130-24803942
Coord C2 exon
chr2:24803014-24803129
Length
813 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TTGTGGCCATCTATTAATAGGAT
3' ss Score
7.44
Exon sequences
Seq C1 exon
TACTGCGTGTGTGTAGATGACTGCTCCTCTAGCACCTGCATGTGTGGCCAGCTGAGCATGCGCTGCTGGTATGATAAG
Seq A exon
GTGAGGAAACACATTTGCTGCACATGTGCTTATGTGGTAAGTTCCATGAAAGTGAGTCTGTGAGCATGTTTTCTGATTCTCAGATGTCCTAGTGACATTGGGACAATTCGAGGTGAGCTGGTTATGGAAAAAAAGTAGAAGGAGGTGACAAGCTGAAATTAAGGGGTGATTCTAAGTAGATTATGGGGCTGCGGTATGAGTTCCCAGAGTCGTCGGGTTGAAACCCATGTCTTTTGTCACTACCTGGATAATCCTGGCTCTCCTGGCATAGCTGTAGAAGGAAACGTCTTTGTTGTTTTTGTTTGGTGAGCCCTGCCATATGTTTACCACATATATTTGTCCAAAGAGATGACAAGTAGAAAGACCAAGCCAGGCTAGACTGGATGGCTATTATCACTAGACACAGTGGCCTGAGGTTTTAGTGTCATGGTCTTACAAGGAACGGACAGTGTTAGTGGAAGGAGGCACTCAGTCAGTAGCCTTGGGACCCAGGATGCAGCTCGGGGACAACGTATGCAGAGAGAAGAGGTGCATAGTTTTGAGACAGGGCAGGGCAGGAGGAGAGAACAGCATTAACCAGGGAAGATTTCTCCAAGAGGTCCTCAAACCTGTATCATACCTGTGCAATTTCCATTCAGACCACAGATGTGGAGCCTAACCCTGCTATTCCCCTAGCTGTTAATGTCTACCCATAAGCCATTGTTTGTGTATATTTGAAGCCAGACTGGGCATTTTGTAAAAATATGTTATTAAAGTTCATTTAAAGAGAATGCTAGTTGACATCTGCTGGCCCTTGTGGCCATCTATTAATAG
Seq C2 exon
GATGGCCGACTTCTGCCTGAGTTTAACATGGCAGAACCACCCTTGATCTTCGAGTGCAATCATGCCTGCTCATGCTGGAGGAACTGCCGCAATCGTGTGGTGCAAAATGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036893:ENSMUST00000147147:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCGTGTGTGTAGATGACTG
R:
AGACCATTTTGCACCACACGA
Band lengths:
190-1003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types