HsaINT1012293 @ hg38
Intron Retention
Gene
ENSG00000181090 | EHMT1
Description
euchromatic histone lysine methyltransferase 1 [Source:HGNC Symbol;Acc:HGNC:24650]
Coordinates
chr9:137814431-137816062:+
Coord C1 exon
chr9:137814431-137814508
Coord A exon
chr9:137814509-137815946
Coord C2 exon
chr9:137815947-137816062
Length
1438 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCTGCTCATCTGTCCACAGGAT
3' ss Score
10.92
Exon sequences
Seq C1 exon
TACTGCGTGTGCATCGACGACTGCTCCTCCAGCAACTGCATGTGCGGCCAGCTCAGCATGCGCTGCTGGTACGACAAG
Seq A exon
GTGAGGGCGGCCTCGTGTGCGTGGGCTCAGGTGGTAAGTGCCGCTGGTCCGGGTCTGCAAAAACAGTGCAGGCGTCTGTGACCCCAGCGCTGTCGTGGCAGCGTCGGGAAGGAGTTGGAGGTGAGCTGGGTGTGACAGGCAGGGGAGGCACAGCGGGCACCAGCACCCGAGTCAGGGTCGTGAGCCGAGGACATGGCTGCGGATTCCCTGGGGCTGGGGTCTGCATCCTTTGTGGCTGCCTGGATGGTGGCGGGGGTGGGCAGCGTCAGCCTGGCTTGGCCCCAGGAGGAGGTGCTGCTTATGTTGTGTGTATCTGGTAAGCTGTGCCTTGTGCTTGCTGAGTGTGAGGGGTGTGAAGAGGGAGGGTGCTGCCGGGCTGGGTACAGGGAGCATCAGTGTGGGCGCTGGGCTTGAGGAGACACAGGATTGGAAGTTTCTGTTGGGTGCTGGTCCTCGGAGGAGCCCAGGTTGGAGGCTGCTGAGGAGGAGACGGGAGTGGGGAGTAGCCCTGGCTAGCAGGGGTGCAATTCAGGGGAGGGATGTCTAAGCAGAGGCGGAGAGTTCCTGGTCTCCCGAGTTCAGAGGTCACGGTGGGGGCGGAAGCCAGCATGGCCTGGGTAAAGAGACGCGAGCAGGGAGAGGCAACAGGCGTCCCCTCTGGAAGCAGACTTTGGAGGAGAGTGGACATGGAGGGTCAAGTGTTTACCCATCTGAATTAGAGGCTCCAATGGGAAAAGGATTCGTGCCAGTGAGGGCTATGGAGATGGTACGCTCAGAAAGCCACCAAGCTCATGTCCGAGTGGTGTCTTTTCAGGTGGACAGTGTTGCTGAGGGGGCGCAGGAAGGAATGTTCTGAGGAGCGCCCTAATTGTTCAGAGCAGCCCCTGAAGCCGTCAAGCCAGAGTGTGCCTGGGCAGCCCTGGGCCCCGCGCCTCAGCTCACACAGCCCTGGGGGAGCATCTGCACCCAGTGCTGCTGTACCTGGCCTGGCTTCAGGGGGGTAGAAAGGGGAGCAGAGGGCTGGGTCCCTCCACAGTTGAGGATTTGCAAGGCAAGGAGGCCAGGAGTGCAGGAGGGTGCAGGAGGCCCCAACCAGCTGAAGAAAGCAGAGCAACCCAGGAGCTGGCAGCCTCGGTGAGGCTGGAGAAGCCCAGGCTGGGGGCTGGGAAGGCCCTGGGTGGACAGAAGCTGGCCCCAGGCTGGGCCTAGGGGAGCGCTCCAGGGGGTCTCCACAACCTGTGTGGGCATCTGGGTGGAGGCTTCTCATCCAAACCGTACACATGGAGTTTTTCCCTAGGTGGGTGTTCAAGTTTGGCCAGAAACCATCGTTTTTATGTCCGTTTAAGCCACACTGGGCACTTAGTAGAAATGGGTTGATGTCAGTTCAATTAAAGAGTGAGTAACCTCTGCTGGGCCCTTGCTGCTCATCTGTCCACAG
Seq C2 exon
GATGGCCGGCTCCTGCCAGAGTTCAACATGGCGGAGCCTCCCTTGATCTTCGAATGCAACCACGCGTGCTCCTGCTGGAGGAACTGCCGAAATCGCGTCGTACAGAATGGTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181090:ENST00000460843:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGTGCATCGACGACTG
R:
CTGAGACCATTCTGTACGACGC
Band lengths:
190-1628
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains