DreINT0061766 @ danRer10
Intron Retention
Gene
ENSDARG00000068157 | ehmt1a
Description
euchromatic histone-lysine N-methyltransferase 1a [Source:ZFIN;Acc:ZDB-GENE-040724-44]
Coordinates
chr5:28895109-28895515:-
Coord C1 exon
chr5:28895438-28895515
Coord A exon
chr5:28895225-28895437
Coord C2 exon
chr5:28895109-28895224
Length
213 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GATGGTTTCTTAATGCCTAGGAT
3' ss Score
6.09
Exon sequences
Seq C1 exon
CACTGCAGTTGTAAAGATGACTGTGCGTCTAGCAGCTGTATCTGTGGCCAGCTCAGCATGCACTGCTGGTATGGCAAG
Seq A exon
GTAAGCCGATGCTAGTGCTAAATTATTCACTTTAGCTGAATGAATGACAAGCTGATAATAAAGTGACATATAAACAATAAATGTTGCCAATCACAGCTCATTAGCAGCTGTTCGGTGACAAGCTGCTAGTTATTAAACGTGATCACATTAAGATCTGATTTGCATTAAGGTTATTATTAGGATTTGAGTAAATGATGGTTTCTTAATGCCTAG
Seq C2 exon
GATGGCCGATTGCTAAAAGAATTCTGCCGGGATGATCCACCCTTTCTGTTCGAGTGTAACCACGCCTGTTCCTGTTGGAGAACGTGCCGGAATAGAGTCATACAGAATGGCCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068157:ENSDART00000126018:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0503311=Pre-SET=FE(23.6=100)
A:
NA
C2:
PF0503311=Pre-SET=PD(29.2=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGTAAAGATGACTGTGCG
R:
CGAAGGCCATTCTGTATGACTCT
Band lengths:
190-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]