BtaINT0056829 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33492028-33501384:+
Coord C1 exon
chr13:33492028-33492187
Coord A exon
chr13:33492188-33501238
Coord C2 exon
chr13:33501239-33501384
Length
9051 bp
Sequences
Splice sites
5' ss Seq
AGCGTAAGT
5' ss Score
10.07
3' ss Seq
CGTGTGGTTTCTTCTGTCAGCTT
3' ss Score
6.98
Exon sequences
Seq C1 exon
GAACACCATCTTCAGCGGGCTATTTCAGCACAGCAGGTGTATGGCGAGAAGAGGGATAACATGGTTATACCAGTCCCAGAAGCAGAAAGTAACATCGCTTACTATGAGTCTATATATCCTGGGGAATTCAAGATGCCAAAGCAGCTCATTCACATACAGC
Seq A exon
GTAAGTGATTACTCTCTTGATGACTGTATCTTGTACTGTGTTCTTACGTATCTCAACAGATTTTTATGTTTATCTGTTGGGGGCCCCTTCATTGACCAGCATCAGCTTGAGAGTTATCAGAGCCATTTTCACCTTTTACACTTGTGCTTGAGATTCCCGCCTGATAAGAAAGAACACAATTTCAGCCTAGATTTTTATTTTAGCTTCATCTCAACATGGCATCTTCTGCTACTGTAGATGAGTAGGATAAAGAATATACCTTTAGATGTAGAAATCATTTTCTTACTGTTCAGAAATAGTAATACTAATTGCCTTAAAGAATTTCTTAGTAGAAGTCAGAAGTCAACAAACCTTTTCTGTAAAGGGTCAGATTGTGTTTTAAACTTTGTGGGTCATTCAGTCTCCGTCACAACTATTTTACTCTGCAGTTACAGACAAAAGCAACAATAGACAGTACATAAACAAATGGGCATGGCTGTGTTCCAGTAAAACTCTCTTGACAAAAACATGTGTCAGTCCAGTATTGGCCCACAGGCCATAGCTTGCCAGCCCCATCTGTGTTTCTGTTTTTTTCTTTCTTGGCCAAGCCCCACAAGTTGATGAGATATTAGTTCCCTGACCAGGGACCAAACCTGAGCCCTTGGCAGTGAAAGCATGGAGTCCACTGGGCCCCCAGGGAATTCTCATGATTTTTTTTTTTTTTTTTTTTTTTTTAATTTAGTGTTTTAGTTGGTAACTTGTGTCACTTGGTACTGATAGAGGTCTTCAGTGGAAATGACCCTTTGATAGCTTAATCACATTTGATGATGAACTGCTGAGAGCTTGTAAACTTAGGTGAATTTATTTTGTTCATTTGGTCCCCATGTTGTGGACCACTAAATGTGTAATTGCAGGGTTGCTAAGGAAAAGGTGTTAACAGCTTTCATTTTTGTCTTGTCTTTATGATCAAGAGCTTTTTCCAGGGGCCTGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGCATTTTTTAAAAATTATTTCTTACATAATGAAAACCACAAGTAAACATGCCCATATTGACTCTTAACAGTTCTGTGTTAGCATTTGATGTTTTTAACTTGTGATGTTTTTTCACCTTTACCTACAGCTTGTACTTGTTAGGAAAAAAATTTTTTCTTTAGAAAAAAAATTTTTTCCAGTTTATTAAAGATTACTTTGAAGTAAACCAAAAAACTGGCGTGTGTTTTTCTTGCCTACTCGTGTTTAATTACATATGAAACACAGACATTCTAAACAAAGTTTACCAGTAATAGGACCTAAAACTTTAATTCTCTGGAAAGTCATGTCAGTGTGAAATTCCAGAATGGATCCTTGCTGTATATGTTAACCAGGACCACACTGCATTCCACAGCCACTGGCTGTATTATTTCATGAATATATGCTATCAGGTTAAAGCAGGGTGGAGCAAGATAAAATTACATTATTCAATTTACATTATCATTACTATCAGAAAAAAAGCTTCGAATGCTTGTTTTACAAATAGGTGCTTTTCTACTGATGACCAGAATTCACAAATTTCATTTTATTGGTAGCTTGTGGGTTAAATTGTGGTCAGTAAAGTCAGGGTACTATATTTAACAAGGCATTGACTCTGCTGACATTGTAATCAAATAACAGTAATAAAATGGAAGCAGAATTGTAAATTATTTGGGAAAAAAATGTTTTTCATCAGTACAAACTTAGAAAGACATATTACATTGGAAAGTTTATGAACACTGTCAGCCAAATGAGTGTTAGCTGACTTTGAGTTTCTTTTAACATTCTTACATGACTATAGATTCACAGAATATGTAAAGCCTTGTATATTCACCACCACAATTATACTCAGTTATACCATCACCACAAGACTCTACCTTATTGCTCCTTTAAATGCACCTCTGGCAACCACTCATCTGTTGTCCATCTTTGTAATTCTGTTTGTTGATGAAGGTAACGTGAATGGAATTACGAATGTATATCCTTTTGAGACTGACTCTATCCTCTTAGCATAGCCTCCTTGACATTCATTCAGGCTGTTGCATGTATCAGTAGTTCGTTCCTTTCTCTTCCTGAGCAGTCTTCCATAACATGCACTGCAGCAGGTTGCATTGCTCACTCACTGAGAGAGTGAGTCGTTTCCAGATTTTGACTACTTCAAATAAAGCTGCTGTGAACGTTCATGTACAAATTTTTGAGTGAACATAAATCTTTACTTATCTGGGTTAAATGCCTGTAAGTGTAGTTCCTGGGTCATCCAGTTTTAGTTTGACAAGAGTGTATCCTCTATCTCAGAAGGCTGTACCTGTTTGCAGTATCATCAGCTGTGTATGTGGGATCCAGTTTCTCCTTTATCCTTGTCAGCATTTGAGGTTATCACTTTTTAATTTTAGCCATTCTAGTAGGTATACAGTGATGTCTCACTGTACTTTAAATTTGTGTTTCTCTAAATGACTAATATGTTAAACATCTTTTCATGTGTTTTATGCCATCTACATATCCTTTTTGGTGAAGATTGTGCGTGTCTTACTTACTTTCTAATTAGAGTATTTTAATGTTAAGTTTTGAGTATTTTGTTTATATATTGTAGACACAAGTCCTTGTCATATGTGATTTGGAAATATTTTTTCCCGGTATATAAATTGTCTTTTCATTCTCTTAACAGTTTTCCACAGAGTAGAAGTTTTTAATTTTGGTTAGATCCATTTAGTATCAACTCCAAGAATAGTCTTTGTTTTGCCCAGGGTCCAAAGATGGTTTCCTATGACCTGTTCTAGGAGTTTCATAGTTCTGCATTTAAGTGTGTGATCTATTTTGACTGTGAGGTTTAGGCCCCCGCTGCTCCAACACTGTTCATTGAAAAAGTGATTCCTCCTCTATTGATTGTTTTTGTTTCTTCAACAAAAATCAACTATGCATATTGATGTGACTCTATTTGTGGGTTCTGTATTCTACTCCACTGATCCCTGTGTTTATCCCAAGATAGTACCACTGTCTCGATTACTGCAGCTATATGATCATCCTTAACATTGGGGAAATGCTTCCTCCTTTTTTTTTTTTTTTTTTTCAAGATTGTGTTGGGTATTCTAAGGCTTTTCCCTGTAAATATTTCCCTAAAAATGCCACTAGAATAAGTGTGTCTGCGAAGAAACTTGCTGTGATTTTGATAGGAATTGCATTTAAATCTTTAGATCATTGTAGGGAGAACTGACATCTTTTCTTTCTGTGTTGAGTCTTCTAGTCCATGACCACAATATGACTCTCCAGGTATTTAGGCCTTTGATTTCTTTAGTTGACACTTTATAATTTTCATCATGAAGATCCATGGTGTTTTAGTACTTTTTTTTTTTATACCTGTTTTCTTTGACACAATTGAAAATGGTATTGTACTTTTGATTTTTGTTTCCATCTGTTTATTGTCAGTATGCAGAAATGCAGTTCAGTTGTATGCTGAGCATGTGTCCTGTGGCCTTAACTGAAATTGCATGTTAGTTCTAGAAGATGTTTGCAGGTTCTTTGGGATTTTCTAAATGGAGAAAAATCATGTCGTAGTCTGCAAATAGAAATGGTTTTGCTTTCCCTTTCCAACCTGTATGTTATTAATTTCTCTTTCTTGCCTTAGTATAATGGTTAGAACTTGAATACAGTGTTGAGAGCAGACATTCTTGCCTTGTTCCTGATCTTAAGGGAAAAAATGTAGTCTTTCACCGTTAAGCATTATGTCACCTGAAGGGGGTTTTTTGTAGTTGCTTGTAAGAGTTTGAGAAAGTTCTCTGTTCCTAGTGTATTGGGAGTTTTTATCCTGACTATTGAATTTGTCAGCTGCTTTTTCTGCATCAGTTAATAAGGTCATGTGATTTTTCCCTCCTTCTTTATTCTCTGATGTGATGGGTTTCCTTGGTTGGTTGTCAAATATTGAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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Seq C2 exon
CTTTTAGTTTGGATGCTGAGCAGCCCGATTATGATTTGGATTCTGAAGATGAAGTATTTGTGAATAAACTGAAGAAGAAAATGGACATCTGCCCATTGCAGTTTGAGGAGATGATTGACCGTCTAGAAAAAGGCAGTGGTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF105134=EPL1=FE(36.8=100)
A:
NA
C2:
PF105134=EPL1=PD(30.6=89.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development