BtaINT0056834 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001552 | EPC1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:HGNC:19876]
Coordinates
chr13:33504773-33505119:+
Coord C1 exon
chr13:33504773-33504949
Coord A exon
chr13:33504950-33505029
Coord C2 exon
chr13:33505030-33505119
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CACTTACCTTTTATTTAAAGGTT
3' ss Score
7.71
Exon sequences
Seq C1 exon
CAAGATAAGGCCGATCTTATCCGACCTAAACGTAAATATGAAAAGAAGCCCAAAGTCTTACCTTCGTCTGCTGCTGCTGCTCCTCAACAGGCCAGCCCCACCACGCTGCCGGTCTTCAACGCTAAAGACCTGAACCAGTATGACTTCCCCAGCTCAGATGAAGAGCCTCTCTCCCAG
Seq A exon
GTGAGTGCAAGGATTTTCTGTAAACGAGATGAGGAACATAGGAAGGCACACAATCTGATGCACTTACCTTTTATTTAAAG
Seq C2 exon
GTTCTGTCTGGCTCTTCAGAAGCTGAGGAAGAGAATGATCCCGATGGCCCTTTTGCTTTCCGAAGGAAGGCAGGCTGTCAGTACTACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001552:ENSBTAT00000002038:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.661 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTACCTTCGTCTGCTGCTGC
R:
CAAAAGGGCCATCGGGATCAT
Band lengths:
176-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development