MmuINT0058039 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6450297-6450639:-
Coord C1 exon
chr18:6450466-6450639
Coord A exon
chr18:6450387-6450465
Coord C2 exon
chr18:6450297-6450386
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTCGTTGCTTTATTTCAAGGTT
3' ss Score
7.3
Exon sequences
Seq C1 exon
CAAGATAAGGCTGATCTTATCCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCCCCATCTGCTGCCGCCCCTCAGCAGCAGAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
Seq A exon
GTAAACAGAAGACCAGCTATCTGCACACGGAAGAGGAACGTAGGAACTGCATTTTGACCTCTCGTTGCTTTATTTCAAG
Seq C2 exon
GTTTTGTCTGGCTCTTCGGAAGCTGAGGAAGAGAATGACCCTGATGGCCCTTTTGCTTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=NA C2=0.633
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCAAAGTCTTACCCCCAT
R:
AAGGGCCATCAGGGTCATTCT
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types