RnoINT0055458 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57317976-57318319:-
Coord C1 exon
chr17:57318146-57318319
Coord A exon
chr17:57318066-57318145
Coord C2 exon
chr17:57317976-57318065
Length
80 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
TCTCGTTGCTTTATTTCAAGGTT
3' ss Score
7.3
Exon sequences
Seq C1 exon
CAAGATAAGGCTGATCTTATTCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCGTCGTCTGCTGCCGCACCCCAGCAGCCAAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
Seq A exon
GTAAACAGAAGACCAGCTCTCTGCACACAGAAGAGGAACATAGAACCCGCATGTTTGACCTCTCGTTGCTTTATTTCAAG
Seq C2 exon
GTTTTGTCTGGCTCTTCAGAAGCTGAGGAAGAGAATGACCCTGATGGCCCTTTCGCTTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.810 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAAGTCTTACCGTCGTC
R:
AAGGGCCATCAGGGTCATTCT
Band lengths:
179-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]