GgaINT0101658 @ galGal3
Intron Retention
Gene
ENSGALG00000007169 | EPC1
Description
NA
Coordinates
chr2:14068448-14068816:+
Coord C1 exon
chr2:14068448-14068624
Coord A exon
chr2:14068625-14068726
Coord C2 exon
chr2:14068727-14068816
Length
102 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
ACCCTGCTTGCATTTTACAGGTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
CAGGATAAATCTGATGTTATTCGGCCTAAAAGAAAGTATGAGAAGAAGCCAAAAGTCTTACCTTCGTCTGCTGCTGCTACTCCTCAACAGACGAGTCCTGCTGCACTGCCAGTCTTCAATGCTAAAGATTTGAATCAGTATGATTTCCCTAGCTCGGATGAAGAACCCCTCTCCCAG
Seq A exon
GTAGGATCTCTAGAATTCTCCCCTGCTGTTAGGAAAGGAATAGGAATAAAACTCACACACTTACTAATACCTGTCCTTGTCCACCCTGCTTGCATTTTACAG
Seq C2 exon
GTTTTGTCTGGTTCTTCAGAGGCTGAGGAAGAAAATGATCCCGATGGTCCTTTTGCCTTCCGTAGGAAAGCAGGCTGTCAGTACTATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007169:ENSGALT00000011610:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=NA C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAAATCTGATGTTATTCGGCCT
R:
CTGACAGCCTGCTTTCCTACG
Band lengths:
257-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]