BtaINT0058356 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56270030-56270331:+
Coord C1 exon
chr19:56270030-56270140
Coord A exon
chr19:56270141-56270238
Coord C2 exon
chr19:56270239-56270331
Length
98 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTCCCTTGGCCTCTCCAGGAG
3' ss Score
9.06
Exon sequences
Seq C1 exon
GACTATGAGCTGCAGGCAGACACCTACCGAGGTTCCCTGGAGCCCACCCAGGTGGGATCGGCCCCCAAGAGACCGCGAGTTGCGCCCCTGCAGGACAGCATCCAAGCCCAG
Seq A exon
GTGAGCCGGGCTCTTTGTTCCTCCTTCCCGGGCTGCCAGCTCTGCAGCCTCTGAGGGAGGAGCTGACGCTGGCGCACCCCCTCCCTTGGCCTCTCCAG
Seq C2 exon
GAGAAGAACCTGACGAAGGCCTACACTGAGGTGGCAGCTGCCCACCAGCAGCAACTGCACCAGCTGGAATTTGCCAGAAAGATTCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517:ENSBTAT00000013898:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGAGCTGCAGGCAGACAC
R:
AATTCCAGCTGGTGCAGTTGC
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]