MmuINT0059577 @ mm9
Intron Retention
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116086382-116086686:-
Coord C1 exon
chr11:116086576-116086686
Coord A exon
chr11:116086475-116086575
Coord C2 exon
chr11:116086382-116086474
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCTCCCCACTTTGTTCCCAGGAG
3' ss Score
9.94
Exon sequences
Seq C1 exon
GACTATGAGCTGCAAGCAGATACCTACCGCTGCTCCTTAGAGCCCGCCTTGGCAGTGTCCGCCCCGAAGAGACTCAGAGTGATTTCCTTGCAGGAGAGCATCCAGGCTCAG
Seq A exon
GTGAGGCTGGTCCTGGCAGGGTTGAGCATCTCCTGGCACCAGCCCTGCAGCCCCTCAGGCCGGAGCTGACTCTGCTGTCCCTCTCCCCACTTTGTTCCCAG
Seq C2 exon
GAGAAGAACCTTGCGAAGGCTTACACTGAGGTTGCCGCAGCTGAGCAGCAGCAGCTGCGCCAGCTGGAGTTTGCTAAAAAGATGCTCAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-Evpl:NM_025276:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTATGAGCTGCAAGCAGAT
R:
TCCTGAGCATCTTTTTAGCAAACT
Band lengths:
202-303
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: