RnoINT0057016 @ rn6
Intron Retention
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105104600-105104894:-
Coord C1 exon
chr10:105104784-105104894
Coord A exon
chr10:105104693-105104783
Coord C2 exon
chr10:105104600-105104692
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTCCCAATTTGGTTCCCCAGGAG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GAGTATGAGCTGCGAGCAGACACCTACCGCTGCTCCCTGGAGCCCACCTTGGCGGTGTCCGCCCCTAAGAGACTCAGAGTGATTTCCTTAAAGGAGAACATCCAGGCTCAG
Seq A exon
GTGAGGCAGGGCTTAGCATCTCCTGGCATCAGCTCTACAGCTCCTCAGGCTGAGCTGACTCTGCTCTCCCTCTCCCAATTTGGTTCCCCAG
Seq C2 exon
GAGAAGAACCTTACTAAAGCTTACACTGAGGTCGCCGCAGCGGAACAGCAGCAGCTGCACCAGCTGGAGTTTGCTAAGAAGATGCTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343:ENSRNOT00000012373:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCGAGCAGACACCTAC
R:
TTAGCAAACTCCAGCTGGTGC
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]