GgaINT0128805 @ galGal4
Intron Retention
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4542089-4542774:+
Coord C1 exon
chr18:4542089-4542199
Coord A exon
chr18:4542200-4542681
Coord C2 exon
chr18:4542682-4542774
Length
482 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
CACTGCTGCTCCTTTTCCAGGAA
3' ss Score
10.02
Exon sequences
Seq C1 exon
GACTATGAGCTGCAGGCAGGCAAATACAGCTCTTCTCTGGACCCTGCCCTGACGGATTTTGCTGCCAAGAGGCTGCGGGTGACCCCTCTACAAGAAAGCATCCAGGCCCAG
Seq A exon
GTACAGTGTTAAGGTGAACACACGGAAACAGTTGCCTTTCTCCTGTGTGCTCTGCAAGCCTTAATCCACCCTTAGAGCCACGTTGTGACCCTAAACCCAGGGACAAATGTCACCAGCCTTTGGCAGGACTGAGCCAGAGCTCCTTTGTGCTCTTCCCAGTTACAGCCCGTATCTCCCATGTCACCTTGGCTTTACCAACTGCCATCCTTGTGTGGCTGAAGGTGAATCTGGAAGCCTGAACTCAGCGTAGGGCAATAGGCATCCAACAGGCACTCAATCAAAGGGGACACGTTCTCCTGCATAAGTACTTAGATGCTCTGTATCTCATTTTCCATGGAAAATCAGATGTGATGACACCAGTCCCTGGGATAGCGCAGCACCCAACGTGTGTTGGGTGAAAGGAGGGATTGGGAGAGCATGATATCCAACAGATCTGTGTGGGGGTGAGTGGGACGAGGCTCTCACTGCTGCTCCTTTTCCAG
Seq C2 exon
GAAAATGATGTATCCAAGCACTACATGGAGCTGGCAGCAGAAAACAGACAGCAGCTCAGCCGGCTGGAGTTTGCCAAGAAGATTGTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108:ENSGALT00000003290:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=NA C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTATGAGCTGCAGGCAGG
R:
CAACAATCTTCTTGGCAAACTCCA
Band lengths:
199-681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]