BtaINT0058886 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018872 | F12
Description
coagulation factor XII (Hageman factor) [Source:HGNC Symbol;Acc:HGNC:3530]
Coordinates
chr7:40260196-40260653:-
Coord C1 exon
chr7:40260482-40260653
Coord A exon
chr7:40260408-40260481
Coord C2 exon
chr7:40260196-40260407
Length
74 bp
Sequences
Splice sites
5' ss Seq
CCGGTGCGC
5' ss Score
7.96
3' ss Seq
GCTTCTCACGTTCAAAATAGCGC
3' ss Score
5.74
Exon sequences
Seq C1 exon
ACCTCAAGGCGAGTTGCTACGACGACCGCGACCGCGGTCTCAGCTACCGCGGCATGGCGGGGACTACGCTGTCCGGCGCACCCTGTCAGTCGTGGGCCTCCGAGGCCACCTACTGGAATGTGACCGCAGAGCAAGTGCTGAACTGGGGACTGGGCGACCACGCCTTCTGCCG
Seq A exon
GTGCGCGCGTGGGACGCGGCTGGAAGTCCCCTTCCGCTCCAGGGCCCTTCTAGGGCTTCTCACGTTCAAAATAG
Seq C2 exon
CGCCTCCACCCCACCTCGTGGTTACAGGAACCCCGACAACGACACCCGCCCTTGGTGCTTCATTTGGAAAGGCGACCGACTGAGCTGGAATTACTGCCGCCTGGCACCGTGCCAGGCCGCAGCTGGGCACGAGCACTTCCCCTTGCCCTCGCCATCGGCTTTGCAGAAACCTGAGTCCACGACCCAGACCCCGCTTCCATCCCTGACTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018872:ENSBTAT00000025122:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(57.8=89.7)
A:
NA
C2:
PF0005113=Kringle=PD(41.1=51.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCACCTACTGGAATGTGA
R:
CGGCAGTAATTCCAGCTCAGT
Band lengths:
169-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]