RnoINT0057482 @ rn6
Intron Retention
Gene
ENSRNOG00000015139 | F12
Description
coagulation factor XII [Source:RGD Symbol;Acc:1359175]
Coordinates
chr17:9740922-9741378:+
Coord C1 exon
chr17:9740922-9741087
Coord A exon
chr17:9741088-9741181
Coord C2 exon
chr17:9741182-9741378
Length
94 bp
Sequences
Splice sites
5' ss Seq
CCGGTTCGC
5' ss Score
2
3' ss Seq
GCTCCCTCTTGAGACTGCAGGAA
3' ss Score
-0.35
Exon sequences
Seq C1 exon
ACCTTAAGGCGACTTGCTACGAAGACAGGGGTCTCAGCTACCGGGGCCAGGCTAAAACTACTCTGTCGGGTGCACCATGTCAGCGGTGGGCCTCGGAGGCCACCTACCGGAACATGACTGAGACGCAAGCTCTAAGCTGGGGCCTGGGCCACCACGCATTCTGCCG
Seq A exon
GTTCGCAGGGAAGGGACAAGGCAGGGCAACTCGCTTCCCCTTAGGGTCCTCGGGGGTCCCCGTGCTCTAACAGTGCTCCCTCTTGAGACTGCAG
Seq C2 exon
GAACCCAGATAATGACACACGTCCATGGTGCTACGTCTGGAGTGGCGACAGGCTGAGCTGGGACTACTGCGACCTGGAACAGTGCCAGATGCCAACGCTCACATCTCCGGTTTCCCCTGAGAGTCACGACATGCTGAAGCCCCGGCCTCCCATATTGCAGATGCCTCAGTTCCCGTCTCTGTCCGATGCACTAGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015139:ENSRNOT00000066586:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.203
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(63.3=89.3)
A:
NA
C2:
PF0005113=Kringle=PD(35.4=41.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAACATGACTGAGACGCAA
R:
GAAACCGGAGATGTGAGCGTT
Band lengths:
173-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]