MmuINT0060105 @ mm9
Intron Retention
Gene
ENSMUSG00000021492 | F12
Description
coagulation factor XII (Hageman factor) [Source:MGI Symbol;Acc:MGI:1891012]
Coordinates
chr13:55522336-55522769:-
Coord C1 exon
chr13:55522604-55522769
Coord A exon
chr13:55522509-55522603
Coord C2 exon
chr13:55522336-55522508
Length
95 bp
Sequences
Splice sites
5' ss Seq
CCGGTTCGC
5' ss Score
2
3' ss Seq
GCTCCCTCTTGAGATTGCAGGAA
3' ss Score
0.55
Exon sequences
Seq C1 exon
ACCTTTGGGCGACCTGCTATGAAGGCAGGGGGCTCAGCTACCGGGGCCAGGCTGGAACTACGCAATCGGGTGCGCCATGTCAGCGGTGGACCGTGGAGGCCACCTACCGGAACATGACTGAGAAGCAAGCGCTAAGCTGGGGCCTGGGCCACCACGCATTTTGCCG
Seq A exon
GTTCGCGAGAAGGGACCGGGCAGGGGAACTTGCTTTCTCTTAGGGTCCTCGAGGGCCTCCCCACGTTCTAACAGTGCTCCCTCTTGAGATTGCAG
Seq C2 exon
GAACCCAGATAATGACACACGTCCATGGTGCTTCGTCTGGAGTGGCGACAGGCTGAGCTGGGACTATTGCGGCCTGGAGCAGTGCCAGACGCCAACGTTTGCACCTCTAGTTGTCCCTGAGAGTCAGGAGGAGTCCCCGTCCCAGGCACCATCTCTGTCCCATGCACCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021492-F12:NM_021489:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.339
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PU(63.3=89.3)
A:
NA
C2:
PF0005113=Kringle=PD(35.4=47.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAACTACGCAATCGGGTG
R:
AATAGTCCCAGCTCAGCCTGT
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: